Non-Coding RNA Search

Ss1.1-rret03_e18.5

Sequence:


               
               GGGCTTCCTTGTCAGAGATGGCAAAGGTCTCTAGTCCTGGAACTAAAAGGCTTTGAACAT
TGAGCTATTTCTTTTTTTTTCTTTCTCAGTTTAATGCTATAATTCTTGTGATAGCAAAAC
CTGACTTGAACCTACGTGAGACTATTATAACTATTTATGCCACTCCGTAGGCTGTTCATT
GATTTTGTCTGAAGAAATACCGATGGGCTTGATTACAGGGATTTTCCCAGACTCTGTGGA
GATGTCTCGTAATATCTAGTATATGCCCCATATTACCTTTTCAAAATGCAAAAAAAAACA
AACAAAACAAAAAGATGAATTCTGAAACACATCTGGCCTGCAGAATTTTGGATGTGGGAA
TCGTAGATGCTTAGGCAGCATCACACAACCATCTGACTTCAAAAGAGGAAAATATTACAA
GGCAAATTCTATTTTTTTATCTTTTTTGGTTCAATTCTGGTACAGCTTTTTTATGCTGAC
TTGCTTTTTTGCTCAGGGGGAGAAGAGAAAGCCCCAAGTCAGACTGTTAGGAAAACTGTT
AGTTTTATTTGTTTTTTTTTAAGAATCGCATTGATTCAACACTTTCTATTGTACTCAGAA
GTGAGTAGATCTTACCAGTGGCAGAAGAAGTTTAATCATAATTCTGTTGAAATGTGGGTT
CTCTGTAGGTAACTAACAATAGCTTATGTGAGTTTCAGTTCTGAAGTGCCTGACTCTGCC
AGGTTGGGTTGAACTGTTTTATTATAATATTTGTGAGTATATTTATTTTAAAATGTTTAA
TGTTTTAAAATAAATAGCAACTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTTCCTTGTCAGAGATGGCAAAGGTCTCTAGTCCTGGAACTAAAAGGCTTTGAACAT
TGAGCTATTTCTTTTTTTTTCTTTCTCAGTTTAATGCTATAATTCTTGTGATAGCAAAAC
CTGACTTGAACCTACGTGAGACTATTATAACTATTTATGCCACTCCGTAGGCTGTTCATT
GATTTTGTCTGAAGAAATACCGATGGGCTTGATTACAGGGATTTTCCCAGACTCTGTGGA
GATGTCTCGTAATATCTAGTATATGCCCCATATTACCTTTTCAAAATGCAAAAAAAAACA
AACAAAACAAAAAGATGAATTCTGAAACACATCTGGCCTGCAGAATTTTGGATGTGGGAA
TCGTAGATGCTTAGGCAGCATCACACAACCATCTGACTTCAAAAGAGGAAAATATTACAA
GGCAAATTCTATTTTTTTATCTTTTTTGGTTCAATTCTGGTACAGCTTTTTTATGCTGAC
TTGCTTTTTTGCTCAGGGGGAGAAGAGAAAGCCCCAAGTCAGACTGTTAGGAAAACTGTT
AGTTTTATTTGTTTTTTTTTAAGAATCGCATTGATTCAACACTTTCTATTGTACTCAGAA
GTGAGTAGATCTTACCAGTGGCAGAAGAAGTTTAATCATAATTCTGTTGAAATGTGGGTT
CTCTGTAGGTAACTAACAATAGCTTATGTGAGTTTCAGTTCTGAAGTGCCTGACTCTGCC
AGGTTGGGTTGAACTGTTTTATTATAATATTTGTGAGTATATTTATTTTAAAATGTTTAA
TGTTTTAAAATAAATAGCAACTTC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               10-302, gnl|bosTau2|chr24 (44834157-44833875)
               

               
               10-302, gnl|Hg17|chr18 (59147740-59147455)
               


               
               346-784, gnl|bosTau2|chr24 (44833870-44833425)
               

               
               346-784, gnl|Hg17|chr18 (59147428-59147024)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-302, gnl|bosTau2|chr24 (44834157-44833875)
               

               
               10-302, gnl|Hg17|chr18 (59147740-59147455)
               


               
               346-784, gnl|bosTau2|chr24 (44833870-44833425)
               

               
               346-784, gnl|Hg17|chr18 (59147428-59147024)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               ret (0.128733)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               ret (0.128733)
               

               
               cty (0.10408)

	10-302, gnl\|bosTau2\|chr24 (44834157-44833875)
	10-302, gnl\|Hg17\|chr18 (59147740-59147455)

	346-784, gnl\|bosTau2\|chr24 (44833870-44833425)
	346-784, gnl\|Hg17\|chr18 (59147428-59147024)

	mgp (0.230681)
	sin (0.174948)
	fat (0.147427)
	ret (0.128733)
	cty (0.10408)