Non-Coding RNA Search

Ss1.1-rret03_m11.5

Sequence:


               
               ATGGGCCTCTGCCTCGGCTCCCAACTGCACGGGAGCGCCAAGTACATTCTCGACCCGCAG
AACGGCCTCTCCTTCTCCAGCGTGAAGGTCCAGGAGAAGTCCACGTGGAAGATGTGCATA
AGCTCCGCTGGAAGCGCAGCGCCCGTCCCGGCCATGGGTGGCATGAAGTTCTTCTCTGAC
CACGTGGCGGACACCGCGGCGGATTTGGACCGGATAAAGAGCAAGAACCTGAAAAATAAC
GTGCTCCAGCTACCTCTATGTGAAAAGACCATCTCTGTGAACATCCAGCGCAACCCCAAG
GAGGGGCTGCTGTGCGCCTCCAGCCAGGCCAGCTGCTGCCATGTCATCTGATCCCGGCTG
TTGCCGCTGTGCGCTTCCTGCTCAGAGCCATGAAGACCGGCTCACTTCACTGGTCCCTTT
TTGGTTTTTACTATTTTAAAGCGGACAATTATTTATTACTTTTTCATTTGTTCGCCTGAC
GATGTGACAATGCATGGTCTTTGTGCATGCTGCTAGACACTTCTTTTCCAGCTGAAAAGT
CTCTTGTGTACTTTTTACATTTATAATTTTAATGTGGATGATCAGGATTAAATTAAATGT
ATATTTGGAACCTAATATAAATGGAGCACTTAGAAATTTGATGTTCTGCACTTAACCTAG
AGAGAAAGAAATGCTTTTGTTTCCTTGCGGAAAAACCTAAATTCCTGCCCCGACCTTCTG
TGATATGGATATTCAGTGTTCTGAGGCACACTCTGGTGTCTGAAACAGAACCAAAGCAAT
AACATTGTGATGCCGACAGGCCTGGAGCCCACGAGTGTGTGCACAGGCAGTCTTTCTGAG
GCCTGTGCACAGCAGAGTACAGTGAGCGTCTGCACTGACAACCTTGAAACCCTGATTTCA
ACATACCCACACCTGTTTGTCTTAAGCTATAGTGTGAAAAAAAAAAAAGTCTGGGCTCTT
AAAATTTAATTGAAAAAGATTTTCTTATTTGTAATAGGTGAGATAAAGTGCTTAGATTTA
TAGGGCAGCTTCCCCCGTAGTGGTAAATCACAAGCAGACAATCTCATTTTGTAATGTGAT
GAAGTGAACTGATGATGTCTTAACTCTACTTATAGAGTGCGTGTCTGTCTAACAGAACAA
GATGATGTTCCGTGTAAATTCCTTCCCAGAGGGCACACCCCAGGGTTCCTTTACAACCTC
TTGTAGATAGAAGAAACTATCGGGCCTAACATGGAAAGCAGAGGTGCATGCAGATGTTGG
CAAAGTCAAAACCCCATAAATTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGCCTCTGCCTCGGCTCCCAACTGCACGGGAGCGCCAAGTACATTCTCGACCCGCAG
AACGGCCTCTCCTTCTCCAGCGTGAAGGTCCAGGAGAAGTCCACGTGGAAGATGTGCATA
AGCTCCGCTGGAAGCGCAGCGCCCGTCCCGGCCATGGGTGGCATGAAGTTCTTCTCTGAC
CACGTGGCGGACACCGCGGCGGATTTGGACCGGATAAAGAGCAAGAACCTGAAAAATAAC
GTGCTCCAGCTACCTCTATGTGAAAAGACCATCTCTGTGAACATCCAGCGCAACCCCAAG
GAGGGGCTGCTGTGCGCCTCCAGCCAGGCCAGCTGCTGCCATGTCATCTGATCCCGGCTG
TTGCCGCTGTGCGCTTCCTGCTCAGAGCCATGAAGACCGGCTCACTTCACTGGTCCCTTT
TTGGTTTTTACTATTTTAAAGCGGACAATTATTTATTACTTTTTCATTTGTTCGCCTGAC
GATGTGACAATGCATGGTCTTTGTGCATGCTGCTAGACACTTCTTTTCCAGCTGAAAAGT
CTCTTGTGTACTTTTTACATTTATAATTTTAATGTGGATGATCAGGATTAAATTAAATGT
ATATTTGGAACCTAATATAAATGGAGCACTTAGAAATTTGATGTTCTGCACTTAACCTAG
AGAGAAAGAAATGCTTTTGTTTCCTTGCGGAAAAACCTAAATTCCTGCCCCGACCTTCTG
TGATATGGATATTCAGTGTTCTGAGGCACACTCTGGTGTCTGAAACAGAACCAAAGCAAT
AACATTGTGATGCCGACAGGCCTGGAGCCCACGAGTGTGTGCACAGGCAGTCTTTCTGAG
GCCTGTGCACAGCAGAGTACAGTGAGCGTCTGCACTGACAACCTTGAAACCCTGATTTCA
ACATACCCACACCTGTTTGTCTTAAGCTATAGTGTGAAAAAAAAAAAAGTCTGGGCTCTT
AAAATTTAATTGAAAAAGATTTTCTTATTTGTAATAGGTGAGATAAAGTGCTTAGATTTA
TAGGGCAGCTTCCCCCGTAGTGGTAAATCACAAGCAGACAATCTCATTTTGTAATGTGAT
GAAGTGAACTGATGATGTCTTAACTCTACTTATAGAGTGCGTGTCTGTCTAACAGAACAA
GATGATGTTCCGTGTAAATTCCTTCCCAGAGGGCACACCCCAGGGTTCCTTTACAACCTC
TTGTAGATAGAAGAAACTATCGGGCCTAACATGGAAAGCAGAGGTGCATGCAGATGTTGG
CAAAGTCAAAACCCCATAAATTAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               5-606, gnl|bosTau2|chr7 (42867187-42866599)
               

               
               5-606, gnl|Hg17|chr3 (43364707-43365314)
               


               
               680-1289, gnl|bosTau2|chr22 (13755145-13754555)
               

               
               680-1289, gnl|Hg17|chr3 (43365393-43365978)
               

               
               680-1289, gnl|Mm7|chr9 (121875414-121876007)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-606, gnl|bosTau2|chr7 (42867187-42866599)
               

               
               5-606, gnl|Hg17|chr3 (43364707-43365314)
               


               
               680-1289, gnl|bosTau2|chr22 (13755145-13754555)
               

               
               680-1289, gnl|Hg17|chr3 (43365393-43365978)
               

               
               680-1289, gnl|Mm7|chr9 (121875414-121876007)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               thg (0.253582)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	5-606, gnl\|bosTau2\|chr7 (42867187-42866599)
	5-606, gnl\|Hg17\|chr3 (43364707-43365314)

	680-1289, gnl\|bosTau2\|chr22 (13755145-13754555)
	680-1289, gnl\|Hg17\|chr3 (43365393-43365978)
	680-1289, gnl\|Mm7\|chr9 (121875414-121876007)

	thg (0.253582)
	nms (0.213858)
	tes (0.207814)
	rec (0.17307)
	cki (0.165235)
	lin (0.145603)
	ret (0.128733)
	bla (0.124347)
	ecc (0.115035)
	cbl (0.114797)
	ldo (0.0970026)