Non-Coding RNA Search

Ss1.1-rret05_d19.5

Sequence:


               
               TGCCATGATTAGGCATGATTTTGTCACTGAAAATCTAAACTATACAATGTAGGTATTTTG
CGTGTATGGTTCTACTGAATTTATGCAAGGATGTAGTTTTATACTGAAAGAATAAGTACC
AACTCTAATTTTAGGTGGCATTTCTTTGTAGACATGTTTATACAATACAAAGTTACAATA
GATTTATAAGATGTTTTAATGCCTTTTGAAATAATATGAAATCACCCATTAAAGGACAAA
AATAGGCATATCACTGCTTTGACATAGAGTTAAGGAGAGATGACATTATCACAATTATCC
AAGTAGTCTACAGTGCACTTAACAAGTATAGATATATCTTTAATTATTTTAACCCAGCAT
TTTCAGGACTCAGTTATTTAGAGTGATTTATTTGGGATGTGTAGTGAGTCTTTTTGAGAT
AAGCAGGGGAAGTCAGGAAGACATTGTTTAAGTACTTGGAACATTGTTTAAGTACTTGGA
AATCTATTGTTCATAAAGCACTGAACTATGAACTAGACTATTTTAAGTGACTACAGTTTT
AGTAGAAGCTTACCCTTGGGAAAAAAGTAATGTGGTACTAAATTAGAAAAAATTATGTGA
AACTAACGTGGTGGTGTGCTATAGAGATTAACTACATAAAGGTGCACTAATTATAAGCAT
AAAAGAATAAAAGTGGACTCTGCTTTAAAAATTTTCAACATATGTGTGTGTATGCACGCA
CATACGTATATATACAATTGTTTAGAAGTGGAACATGATATGATAACTCTATTGATATGT
CTATGTAATAAAATGGTGTGCTTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCATGATTAGGCATGATTTTGTCACTGAAAATCTAAACTATACAATGTAGGTATTTTG
CGTGTATGGTTCTACTGAATTTATGCAAGGATGTAGTTTTATACTGAAAGAATAAGTACC
AACTCTAATTTTAGGTGGCATTTCTTTGTAGACATGTTTATACAATACAAAGTTACAATA
GATTTATAAGATGTTTTAATGCCTTTTGAAATAATATGAAATCACCCATTAAAGGACAAA
AATAGGCATATCACTGCTTTGACATAGAGTTAAGGAGAGATGACATTATCACAATTATCC
AAGTAGTCTACAGTGCACTTAACAAGTATAGATATATCTTTAATTATTTTAACCCAGCAT
TTTCAGGACTCAGTTATTTAGAGTGATTTATTTGGGATGTGTAGTGAGTCTTTTTGAGAT
AAGCAGGGGAAGTCAGGAAGACATTGTTTAAGTACTTGGAACATTGTTTAAGTACTTGGA
AATCTATTGTTCATAAAGCACTGAACTATGAACTAGACTATTTTAAGTGACTACAGTTTT
AGTAGAAGCTTACCCTTGGGAAAAAAGTAATGTGGTACTAAATTAGAAAAAATTATGTGA
AACTAACGTGGTGGTGTGCTATAGAGATTAACTACATAAAGGTGCACTAATTATAAGCAT
AAAAGAATAAAAGTGGACTCTGCTTTAAAAATTTTCAACATATGTGTGTGTATGCACGCA
CATACGTATATATACAATTGTTTAGAAGTGGAACATGATATGATAACTCTATTGATATGT
CTATGTAATAAAATGGTGTGCTTCAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               655-788, - strand, RNAz p=0.999992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               655-788, - strand, RNAz p=0.999992

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-808, gnl|bosTau2|chr4 (9996770-9997557)
               

               
               1-808, gnl|Hg17|chr7 (19533000-19532181)
               

               
               1-808, gnl|Mm7|chr12 (117805270-117806097)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-808, gnl|bosTau2|chr4 (9996770-9997557)
               

               
               1-808, gnl|Hg17|chr7 (19533000-19532181)
               

               
               1-808, gnl|Mm7|chr12 (117805270-117806097)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ret (0.128733)

	1-808, gnl\|bosTau2\|chr4 (9996770-9997557)
	1-808, gnl\|Hg17\|chr7 (19533000-19532181)
	1-808, gnl\|Mm7\|chr12 (117805270-117806097)