Non-Coding RNA Search

Ss1.1-rret05_g24.5

Sequence:


               
               AAGAATGTAATTTATTTATTTGAAACTCCTAATAGATTTTTAAGTGATAAAAAAAATCTA
CTACCTTGTCCTGTAAGTCTGCTAGGCTTTCAGCACCCTAAAATATACTAGAATGTGTCA
CTGCTAATTTTTTATTTCTATATAAAAATAGCACATTATTTTATCATTTACTTAAAATTT
TACATTTCTGATTACCAAAGTTCATTCTGATAGCATGTACTTTGTGAATTACCTTTGTCT
ATAACTGACAGATATTTATATTAAAATAAAATATTGTATTAAAATTTGAAAATAGGTATT
TTGGATAGATGTGTCTGTAGTATATAATCTAATGTGATCATAGTTATGATTGCTAATCTT
TTTGTTTACTATAAAATTATATAACTATTTTTCCATTGGGAATGTGTCTTTCTTAATGTT
CAAGGTCTATACTTTGTAAAGTCAAAAAACTTTCTCATTAACTGCAGTTGTTCCTCATTC
TGTACAAAATGAAAGGTTTGGAAATAGTTTGCTATGACACCTTTGGCAAGAAGCCAGAAT
ACTTTATTTGCTTCATCAACTTTAGTGTATATTGTTTTGTTACTTTGTACTAGACCACAT
GTTGATTACTTTTGATTTTGTAATAATAAGTAAAAGGTCAACATTTTCTCTCTTGTACCA
ACCATGTTTGTATTTCTATTTTCTGTAATGTTTAAGCATGATGTTGAACAAATTCACATT
TTCATGTAGTTTGGATGGGAAGAATATTGACTATTTCAGAAGCAGACTAGATCAGAGGCA
ATTATTATTTTCTCTGTATTTACCTGATATTTTATAACTTTTTGGAATCAGAATAATGTC
CTTCATAAATTTGTTTAATTAAAGTCATCTACTTAGGACACATACACAACTATTTGAGGT
TTACGAACTACATCTTTGATAAGGGAAATGGTTTCGTGACATGTATACAATTAAAATGTA
ACTCTATATATTCTATAAGATTGTAAATATTTTATACAACAATACAAATAAAATATTTTT
CTATTATATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATGTAATTTATTTATTTGAAACTCCTAATAGATTTTTAAGTGATAAAAAAAATCTA
CTACCTTGTCCTGTAAGTCTGCTAGGCTTTCAGCACCCTAAAATATACTAGAATGTGTCA
CTGCTAATTTTTTATTTCTATATAAAAATAGCACATTATTTTATCATTTACTTAAAATTT
TACATTTCTGATTACCAAAGTTCATTCTGATAGCATGTACTTTGTGAATTACCTTTGTCT
ATAACTGACAGATATTTATATTAAAATAAAATATTGTATTAAAATTTGAAAATAGGTATT
TTGGATAGATGTGTCTGTAGTATATAATCTAATGTGATCATAGTTATGATTGCTAATCTT
TTTGTTTACTATAAAATTATATAACTATTTTTCCATTGGGAATGTGTCTTTCTTAATGTT
CAAGGTCTATACTTTGTAAAGTCAAAAAACTTTCTCATTAACTGCAGTTGTTCCTCATTC
TGTACAAAATGAAAGGTTTGGAAATAGTTTGCTATGACACCTTTGGCAAGAAGCCAGAAT
ACTTTATTTGCTTCATCAACTTTAGTGTATATTGTTTTGTTACTTTGTACTAGACCACAT
GTTGATTACTTTTGATTTTGTAATAATAAGTAAAAGGTCAACATTTTCTCTCTTGTACCA
ACCATGTTTGTATTTCTATTTTCTGTAATGTTTAAGCATGATGTTGAACAAATTCACATT
TTCATGTAGTTTGGATGGGAAGAATATTGACTATTTCAGAAGCAGACTAGATCAGAGGCA
ATTATTATTTTCTCTGTATTTACCTGATATTTTATAACTTTTTGGAATCAGAATAATGTC
CTTCATAAATTTGTTTAATTAAAGTCATCTACTTAGGACACATACACAACTATTTGAGGT
TTACGAACTACATCTTTGATAAGGGAAATGGTTTCGTGACATGTATACAATTAAAATGTA
ACTCTATATATTCTATAAGATTGTAAATATTTTATACAACAATACAAATAAAATATTTTT
CTATTATATTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               552-1032, gnl|bosTau2|chr26 (787968-788454)
               

               
               552-1032, gnl|Hg17|chr10 (60676334-60675895)
               

               
               552-1032, gnl|Mm7|chr10 (70160533-70160951)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               552-1032, gnl|bosTau2|chr26 (787968-788454)
               

               
               552-1032, gnl|Hg17|chr10 (60676334-60675895)
               

               
               552-1032, gnl|Mm7|chr10 (70160533-70160951)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               fco (0.628832)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)

	552-1032, gnl\|bosTau2\|chr26 (787968-788454)
	552-1032, gnl\|Hg17\|chr10 (60676334-60675895)
	552-1032, gnl\|Mm7\|chr10 (70160533-70160951)

	fco (0.628832)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	nms (0.213858)
	tbr (0.154178)
	lin (0.145603)
	nmm (0.132802)