Ss1.1-rret05_m18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGATTCGAAATATTGGCATATGGTTCTTCTGGATTAGATTGTATAAAATCAGAAGGGG TAGAACCAGGCCTGCTTTTGTTCCATTGAATGTTCCCAATAACAAAAATATTGTCCTTCA CACTAGCTACATGATTTACAGTCTCGCTCCCCAATATGTTATGTATGGAAGCCAAAACTA CCTAATAGAGAGCAATATAACTTACGATGACCATAAAGGCAATTCAACTCTGTCTGTGCC AAAAAGATGTGATGCAGATGCCCCTGAAGATCAATGTACTGTCACCCGGACATACCTGTT CCTTCACAAGTTCTGGTTCTTTAGTGCTGCCTACTATTTTGGTAACTGGGCCTTTCTTGG GGTGTTCGTGATTGGGTTGATCGTATCCTGTTGTAAAGGGAAGAAATCGGTCATTGAAGG AGTGGATGAGGATGACTCAGACCTAAGTGATGATGAGCCCTCCATCTATTCTGTCTGACT GCCTCTCTGGTACGGGTTTTACAAAGCTGACTATTTCTTGTGTATTTTTAAAGTGTCAAA CTAACATTAGGATGAACTGACTAGCTTTCATCAAAAATGGGAGCATGGCTATTAAAAAAC TATATTTTTTATGTTTTCTGAAGTAATGTTATTGTATCATAGATTAACATTTAAATTGCT ATAATAATACTGTGTAAATATAAAACTACTGGCTTTGTGAGGGAATGTGGAAATTTTTTT TCTAGTGTGTAATATAATAGTGATGAATTGATTAAAAATCTTCCAGAAGTAATATTCCCT TTTGTCACTTTGTAAAAATGTAATAAATCACTCATATTTGTGCCTTTGGGTCTCTATAGA GTAATGTGGAATTTTCAAGTGTCTATATCTGATTTCTAAAAATAATATTTATAATAGAGC TGATAAATAAATATTACTCCCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGATTCGAAATATTGGCATATGGTTCTTCTGGATTAGATTGTATAAAATCAGAAGGGG TAGAACCAGGCCTGCTTTTGTTCCATTGAATGTTCCCAATAACAAAAATATTGTCCTTCA CACTAGCTACATGATTTACAGTCTCGCTCCCCAATATGTTATGTATGGAAGCCAAAACTA CCTAATAGAGAGCAATATAACTTACGATGACCATAAAGGCAATTCAACTCTGTCTGTGCC AAAAAGATGTGATGCAGATGCCCCTGAAGATCAATGTACTGTCACCCGGACATACCTGTT CCTTCACAAGTTCTGGTTCTTTAGTGCTGCCTACTATTTTGGTAACTGGGCCTTTCTTGG GGTGTTCGTGATTGGGTTGATCGTATCCTGTTGTAAAGGGAAGAAATCGGTCATTGAAGG AGTGGATGAGGATGACTCAGACCTAAGTGATGATGAGCCCTCCATCTATTCTGTCTGACT GCCTCTCTGGTACGGGTTTTACAAAGCTGACTATTTCTTGTGTATTTTTAAAGTGTCAAA CTAACATTAGGATGAACTGACTAGCTTTCATCAAAAATGGGAGCATGGCTATTAAAAAAC TATATTTTTTATGTTTTCTGAAGTAATGTTATTGTATCATAGATTAACATTTAAATTGCT ATAATAATACTGTGTAAATATAAAACTACTGGCTTTGTGAGGGAATGTGGAAATTTTTTT TCTAGTGTGTAATATAATAGTGATGAATTGATTAAAAATCTTCCAGAAGTAATATTCCCT TTTGTCACTTTGTAAAAATGTAATAAATCACTCATATTTGTGCCTTTGGGTCTCTATAGA GTAATGTGGAATTTTCAAGTGTCTATATCTGATTTCTAAAAATAATATTTATAATAGAGC TGATAAATAAATATTACTCCCCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 41-190, gnl|bosTau2|chr9 (3425549-3425400) | |
| 41-190, gnl|canFam2|chr12 (35298508-35298711) | |
| 41-190, gnl|danRer3|chrUn (50864753-50864940) | |
| 41-190, gnl|dasNov1|scaffold_18993 (1499-1701) | |
| 41-190, gnl|echTel1|scaffold_81537 (4875-4677) | |
| 41-190, gnl|fr1|chrUn (158875738-158875547) | |
| 41-190, gnl|galGal2|chr3 (81482534-81482329) | |
| 41-190, gnl|hg17|chr6 (70465641-70465840) | |
| 41-190, gnl|Hg17|chr6 (70465805-70465656) | |
| 41-190, gnl|loxAfr1|scaffold_34030 (3460-3664) | |
| 41-190, gnl|mm7|chr1 (24961232-24961037) | |
| 41-190, gnl|Mm7|chr1 (24961066-24961215) | |
| 41-190, gnl|monDom2|scaffold_0 (165397768-165397561) | |
| 41-190, gnl|oryCun1|scaffold_150846 (13153-13346) | |
| 41-190, gnl|panTro1|chr5_random (44458981-44459180) | |
| 41-190, gnl|rheMac2|chr4 (66062713-66062912) | |
| 41-190, gnl|rn3|chr9 (23500163-23499972) | |
| 41-190, gnl|tetNig1|chr17 (3993571-3993368) | |
| 41-190, gnl|xenTro1|scaffold_192 (1505017-1505214) | |
| 361-920, gnl|bosTau2|chr9 (3398228-3397666) | |
| 361-920, gnl|Hg17|chr6 (70442885-70442327) | |
| 361-920, gnl|Mm7|chr1 (24976883-24977436) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 41-190, gnl|bosTau2|chr9 (3425549-3425400) | |
| 41-190, gnl|canFam2|chr12 (35298508-35298711) | |
| 41-190, gnl|danRer3|chrUn (50864753-50864940) | |
| 41-190, gnl|dasNov1|scaffold_18993 (1499-1701) | |
| 41-190, gnl|echTel1|scaffold_81537 (4875-4677) | |
| 41-190, gnl|fr1|chrUn (158875738-158875547) | |
| 41-190, gnl|galGal2|chr3 (81482534-81482329) | |
| 41-190, gnl|hg17|chr6 (70465641-70465840) | |
| 41-190, gnl|Hg17|chr6 (70465805-70465656) | |
| 41-190, gnl|loxAfr1|scaffold_34030 (3460-3664) | |
| 41-190, gnl|mm7|chr1 (24961232-24961037) | |
| 41-190, gnl|Mm7|chr1 (24961066-24961215) | |
| 41-190, gnl|monDom2|scaffold_0 (165397768-165397561) | |
| 41-190, gnl|oryCun1|scaffold_150846 (13153-13346) | |
| 41-190, gnl|panTro1|chr5_random (44458981-44459180) | |
| 41-190, gnl|rheMac2|chr4 (66062713-66062912) | |
| 41-190, gnl|rn3|chr9 (23500163-23499972) | |
| 41-190, gnl|tetNig1|chr17 (3993571-3993368) | |
| 41-190, gnl|xenTro1|scaffold_192 (1505017-1505214) | |
| 361-920, gnl|bosTau2|chr9 (3398228-3397666) | |
| 361-920, gnl|Hg17|chr6 (70442885-70442327) | |
| 361-920, gnl|Mm7|chr1 (24976883-24977436) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| tra (0.369276) | |
| ret (0.257467) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| fco (0.157208) | |
| isp (0.150376) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.369276) | |
| ret (0.257467) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| fco (0.157208) | |
| isp (0.150376) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |