Non-Coding RNA Search

Ss1.1-rret05_o12.5

Sequence:


               
               TCGCCGACGCCCCCGCCCCCGCCTCCTCACCAGAGGCATCTGCCCCCTCCGCTGCCCAGC
AAGACCCCACCGCCTCCGCCTCCGAAGACGACGCGCAAGCAGACATCGGTGGACTCGGGG
ATCGTGCAGTGACACCGCCTCGCCGACACCCCGAAAGCCAGACGGCATCCTGCCTCTCCC
TCCACGTCTTCTCCCACGTCCGGCGTTTACCCCGTGGGCCCGTGACGTCTGATCTTAGTG
CAGTTGCTTTTCCTTAATGGGAATCAGTCCCCAGCCGTGGAGGGAGGGGCATCTAGCATC
GGGGAGTGAGGTGACCAAGGGCCTGGGATGAGCTGTTGTGTTTATCAAAGTCGGAGGTTT
CTGAGTGCGTCCGGCTGGAGAGAGCCTACGTCTTGCCCCAAAGTCCTTTCTTTTTGTGCC
AAATGACAGTAGCAAAGAGCCGGGTTGATCCGAGTTGAGCGCGACAAGGAGAGATGAAGC
CCCTTGTCTGGAGGACTGTGTAGTAACTGAGTTTACAAACCCACATGACTCGAGGCTGAA
CCCCAGCCGCCTGCAGGATGTTTCAGCTTCCTTGCTGCACCTGCCGGTGTGATGTTTTGC
TGGTTGAGCGTCTCTTCAACCTACATCAGGAGAGGAAGGTCGGGCCTTTCAGGGAAGTTC
CTGATTTCCTTTGGTGTCATTTAAAATAGGATATTTCTCAGCTACTCAACAGTTACCAAT
TTATGGGGTAGAAACAGCATTAAAAATATGGGATCAAGTGGAAAAACACATGTGAGTATA
GGAAGGTCAGTTTTCTCTCTCTGTTAAAAAAAGCAACTGGATGCCACAGGAGATGCTTTT
AATTGGGTAAATGCCTCTTGTTCTCATTCTGTACAGAAGTGTGTATATATGATGGTCTTT
AGAACTTGTTTTAATTTTTGTGGTCCTCCTGTTTATTGCAATAGGTGCCCGCAAATGATT
CTCAATATGTGTTCTTACTTTTTAACTGGGGAAAAGTGTTAAAAAAAACAACAACAAAAA
GCAACGCAAATTAAGTTTCGTTGGTTTTTTTCAAAGCTCAAGTCCTAAAAATGTTTGTGG
ACAATGATTTTTTAAAAAACTAACTTTGTATAACCTAATATTTTAATTCTATCATCTATA
TTTTTTTATTCACTGTAATCATGATACTCTTCTAATAGGCTCAAAAGTTAATCATGGACA
ACAGAAAATAAAATGTCTGTCATTTAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCCGACGCCCCCGCCCCCGCCTCCTCACCAGAGGCATCTGCCCCCTCCGCTGCCCAGC
AAGACCCCACCGCCTCCGCCTCCGAAGACGACGCGCAAGCAGACATCGGTGGACTCGGGG
ATCGTGCAGTGACACCGCCTCGCCGACACCCCGAAAGCCAGACGGCATCCTGCCTCTCCC
TCCACGTCTTCTCCCACGTCCGGCGTTTACCCCGTGGGCCCGTGACGTCTGATCTTAGTG
CAGTTGCTTTTCCTTAATGGGAATCAGTCCCCAGCCGTGGAGGGAGGGGCATCTAGCATC
GGGGAGTGAGGTGACCAAGGGCCTGGGATGAGCTGTTGTGTTTATCAAAGTCGGAGGTTT
CTGAGTGCGTCCGGCTGGAGAGAGCCTACGTCTTGCCCCAAAGTCCTTTCTTTTTGTGCC
AAATGACAGTAGCAAAGAGCCGGGTTGATCCGAGTTGAGCGCGACAAGGAGAGATGAAGC
CCCTTGTCTGGAGGACTGTGTAGTAACTGAGTTTACAAACCCACATGACTCGAGGCTGAA
CCCCAGCCGCCTGCAGGATGTTTCAGCTTCCTTGCTGCACCTGCCGGTGTGATGTTTTGC
TGGTTGAGCGTCTCTTCAACCTACATCAGGAGAGGAAGGTCGGGCCTTTCAGGGAAGTTC
CTGATTTCCTTTGGTGTCATTTAAAATAGGATATTTCTCAGCTACTCAACAGTTACCAAT
TTATGGGGTAGAAACAGCATTAAAAATATGGGATCAAGTGGAAAAACACATGTGAGTATA
GGAAGGTCAGTTTTCTCTCTCTGTTAAAAAAAGCAACTGGATGCCACAGGAGATGCTTTT
AATTGGGTAAATGCCTCTTGTTCTCATTCTGTACAGAAGTGTGTATATATGATGGTCTTT
AGAACTTGTTTTAATTTTTGTGGTCCTCCTGTTTATTGCAATAGGTGCCCGCAAATGATT
CTCAATATGTGTTCTTACTTTTTAACTGGGGAAAAGTGTTAAAAAAAACAACAACAAAAA
GCAACGCAAATTAAGTTTCGTTGGTTTTTTTCAAAGCTCAAGTCCTAAAAATGTTTGTGG
ACAATGATTTTTTAAAAAACTAACTTTGTATAACCTAATATTTTAATTCTATCATCTATA
TTTTTTTATTCACTGTAATCATGATACTCTTCTAATAGGCTCAAAAGTTAATCATGGACA
ACAGAAAATAAAATGTCTGTCATTTAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               36-1216, gnl|bosTau2|chr26 (31955818-31954656)
               

               
               36-1216, gnl|Hg17|chr10 (129139585-129140758)
               

               
               36-1216, gnl|Mm7|chr7 (131577340-131578528)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-1216, gnl|bosTau2|chr26 (31955818-31954656)
               

               
               36-1216, gnl|Hg17|chr10 (129139585-129140758)
               

               
               36-1216, gnl|Mm7|chr7 (131577340-131578528)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               ski (0.586941)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.586941)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	36-1216, gnl\|bosTau2\|chr26 (31955818-31954656)
	36-1216, gnl\|Hg17\|chr10 (129139585-129140758)
	36-1216, gnl\|Mm7\|chr7 (131577340-131578528)

	ski (0.586941)
	vin (0.332557)
	isp (0.300752)
	bfe (0.299715)
	ret (0.257467)
	sug (0.254582)
	mgp (0.230681)
	sag (0.182715)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	csk (0.140746)
	che (0.136314)
	ssp (0.13552)
	lyg (0.133103)
	nmm (0.132802)
	bla (0.124347)
	eru (0.120048)
	ecc (0.115035)