Non-Coding RNA Search

Ss1.1-rret06_i11.5

Sequence:


               
               ATTAAAAACTAAGAAAGGAAATTATTCATTTTTAAAAGATATGCACCTTGTACTGGCAGC
AAGGGAGTGAGTGGTCCCTAAAACTATGAATATCTCAGTGTTAGGTGGACTATGAAATTA
ATATTGCTTAGTCCACAGTGTATCTTTTTTAAAAAAAAAACCAAAACAATTTGCTGTGTC
TTTTAAGTCGACAAACCTTAAAATTAGGAATAGAGTTGACATTCCATATATTCAGTTTTA
GTAAGCACTTAATGTGTTAATATCGGGTAAGAACAAATAACTTTCTTTCCTATAATATTA
CTAGTTATTATTACACATTAGAAAACAATCAAATGCTGTGGTGAGAACTTCAAAGCATAC
AACAAATAGAGTTAAAGCAATTAATAGAAAAATTTTTTTTCACTACATTTCATTTAGAAA
AATTGGATTTTGTGTTTCTTAGGCTTTGAAGGGAAGTCCTGTTACCTTTGACTTCCAGAG
AATTTTTCTATCCTATTTTTTAATCACATCATATCATCATCTGTTACCCTTATTCATCAG
AGGATTTTTGGCAGAGGATTTCTAGAAAATAAACACGCCAATAGTATTCCTTTAGAAGTA
TGATTTAAAAACCTTGAAGTTTACATAAAACATCACTGTTGCTCAAATTTGACTTTTTTA
TATGAATGTTGGTAACACTCATGTTATATATTGTATTCCAATAAATAGAGAATAGTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAAACTAAGAAAGGAAATTATTCATTTTTAAAAGATATGCACCTTGTACTGGCAGC
AAGGGAGTGAGTGGTCCCTAAAACTATGAATATCTCAGTGTTAGGTGGACTATGAAATTA
ATATTGCTTAGTCCACAGTGTATCTTTTTTAAAAAAAAAACCAAAACAATTTGCTGTGTC
TTTTAAGTCGACAAACCTTAAAATTAGGAATAGAGTTGACATTCCATATATTCAGTTTTA
GTAAGCACTTAATGTGTTAATATCGGGTAAGAACAAATAACTTTCTTTCCTATAATATTA
CTAGTTATTATTACACATTAGAAAACAATCAAATGCTGTGGTGAGAACTTCAAAGCATAC
AACAAATAGAGTTAAAGCAATTAATAGAAAAATTTTTTTTCACTACATTTCATTTAGAAA
AATTGGATTTTGTGTTTCTTAGGCTTTGAAGGGAAGTCCTGTTACCTTTGACTTCCAGAG
AATTTTTCTATCCTATTTTTTAATCACATCATATCATCATCTGTTACCCTTATTCATCAG
AGGATTTTTGGCAGAGGATTTCTAGAAAATAAACACGCCAATAGTATTCCTTTAGAAGTA
TGATTTAAAAACCTTGAAGTTTACATAAAACATCACTGTTGCTCAAATTTGACTTTTTTA
TATGAATGTTGGTAACACTCATGTTATATATTGTATTCCAATAAATAGAGAATAGTTTTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-718, gnl|bosTau2|chr9 (1587665-1586954)
               

               
               1-718, gnl|Hg17|chr6 (72069960-72070644)
               

               
               1-718, gnl|Mm7|chr1 (23579355-23578481)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-718, gnl|bosTau2|chr9 (1587665-1586954)
               

               
               1-718, gnl|Hg17|chr6 (72069960-72070644)
               

               
               1-718, gnl|Mm7|chr1 (23579355-23578481)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbe (0.239234)
               

               
               col (0.195008)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               clu (0.119646)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               col (0.195008)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               clu (0.119646)

	1-718, gnl\|bosTau2\|chr9 (1587665-1586954)
	1-718, gnl\|Hg17\|chr6 (72069960-72070644)
	1-718, gnl\|Mm7\|chr1 (23579355-23578481)

	cbe (0.239234)
	col (0.195008)
	liv (0.146284)
	lin (0.145603)
	ret (0.128733)
	clu (0.119646)