Non-Coding RNA Search

Ss1.1-rret06_l20.5

Sequence:


               
               TTGGTTAGGCTGTGCCAATGAAAACTCTGATAGGATATTTATTTAGAAAGAAAACTTTAA
AAAATAACAACCCCACACCAAAACGCTTGGTTGAACACAATTTTTCTTTGAGAGTTTCTG
CTCATTAGATAAAGGGGAAGGTCAAACTGGATTTGAGTAAATACACAGGAGGCAGAACCC
AGAAGCTGAAAGATTGCACGTAATTGTTCTAACTGTTCGCCTTAACAGCATTGGTGTAAC
TGTAGGAATATGTTCCTCCTTGGCTTACAGATTGTAATTTTGCAAAGAGCTCAAAGCTTC
AGGAATTCTGTGGAGACCGACTTGAGCCTGTGTCCGTAACTTTCCAAGTTAACACCAAAA
AAAGTGCAGTACAACCTTCTTACCTCGCATAAATCATGTCCACCTATTTCTAGAACACTA
CTGCTGCAGATTTTTTTTCACATTTAAAAACAGTCCAGAATAAAAAAATGACATAGTTCT
CCGCTTCCCTCCTCACAGACAAGAGTCACCGCATGCGTAAAATACACCCAAGCAAAGAGG
CCGGCAGAGCCACTTTCTGTAGCTCTCTTTTATAACTGAGTTTGCTGATTGATGTGATGC
AAGGGATTTTATTTAGGGTAAAAGCACTGAAACTAAACTGGAGGAAATTACCCAAAATCC
CAGAATGGCTCTGACAGAATTGCCATTTCGAAAGAACAGCTGAAATCCATTTTTCATATC
TTTGAGAATGAGCTCATTGAAAACCTTATTTTGTAGGGGGATTTTGTAAACCTCCCTCCA
AGCACAAATAATTCCAAACGGGAAGGTTCTGTTGTGTGTATGTGCATGTGTGTTCTCCCC
TCTGAAATTAATTTATTTTCTCTTTGTTTCCCTCTCTGCCTTTTAAAGCTTTTCTTTAAC
CCACTGACTTTTGGAAGAATGACATTTAGTGGATAACTGGCTATTTATGTTGGCTCCACG
GTTAGGCTTATTTACAGTTCATCTAAATAGTCATAAAACAGCATTTATTAATCACTCTTT
TGGACTTTTAAAATAAGACTGCTATCAGAAATAGCTTAAAAATGTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTTAGGCTGTGCCAATGAAAACTCTGATAGGATATTTATTTAGAAAGAAAACTTTAA
AAAATAACAACCCCACACCAAAACGCTTGGTTGAACACAATTTTTCTTTGAGAGTTTCTG
CTCATTAGATAAAGGGGAAGGTCAAACTGGATTTGAGTAAATACACAGGAGGCAGAACCC
AGAAGCTGAAAGATTGCACGTAATTGTTCTAACTGTTCGCCTTAACAGCATTGGTGTAAC
TGTAGGAATATGTTCCTCCTTGGCTTACAGATTGTAATTTTGCAAAGAGCTCAAAGCTTC
AGGAATTCTGTGGAGACCGACTTGAGCCTGTGTCCGTAACTTTCCAAGTTAACACCAAAA
AAAGTGCAGTACAACCTTCTTACCTCGCATAAATCATGTCCACCTATTTCTAGAACACTA
CTGCTGCAGATTTTTTTTCACATTTAAAAACAGTCCAGAATAAAAAAATGACATAGTTCT
CCGCTTCCCTCCTCACAGACAAGAGTCACCGCATGCGTAAAATACACCCAAGCAAAGAGG
CCGGCAGAGCCACTTTCTGTAGCTCTCTTTTATAACTGAGTTTGCTGATTGATGTGATGC
AAGGGATTTTATTTAGGGTAAAAGCACTGAAACTAAACTGGAGGAAATTACCCAAAATCC
CAGAATGGCTCTGACAGAATTGCCATTTCGAAAGAACAGCTGAAATCCATTTTTCATATC
TTTGAGAATGAGCTCATTGAAAACCTTATTTTGTAGGGGGATTTTGTAAACCTCCCTCCA
AGCACAAATAATTCCAAACGGGAAGGTTCTGTTGTGTGTATGTGCATGTGTGTTCTCCCC
TCTGAAATTAATTTATTTTCTCTTTGTTTCCCTCTCTGCCTTTTAAAGCTTTTCTTTAAC
CCACTGACTTTTGGAAGAATGACATTTAGTGGATAACTGGCTATTTATGTTGGCTCCACG
GTTAGGCTTATTTACAGTTCATCTAAATAGTCATAAAACAGCATTTATTAATCACTCTTT
TGGACTTTTAAAATAAGACTGCTATCAGAAATAGCTTAAAAATGTATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               234-351, + strand, RNAz p=0.662141

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-351, + strand, RNAz p=0.662141

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1065, gnl|bosTau2|chr23 (1234798-1233716)
               

               
               1-1065, gnl|Hg17|chr6 (55727910-55726828)
               

               
               1-1065, gnl|Mm7|chr9 (75936083-75937210)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1065, gnl|bosTau2|chr23 (1234798-1233716)
               

               
               1-1065, gnl|Hg17|chr6 (55727910-55726828)
               

               
               1-1065, gnl|Mm7|chr9 (75936083-75937210)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ret (0.3862)
               

               
               cty (0.31224)
               

               
               nca (0.136874)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               cty (0.31224)
               

               
               nca (0.136874)
               

               
               tra (0.123092)

	1-1065, gnl\|bosTau2\|chr23 (1234798-1233716)
	1-1065, gnl\|Hg17\|chr6 (55727910-55726828)
	1-1065, gnl\|Mm7\|chr9 (75936083-75937210)