Non-Coding RNA Search

Ss1.1-rret06_o22.5

Sequence:


               
               TAGAGTGTCTTACAAGAGTTGTTCATACATAATGATCATCACACTTTCTGAACTGAGGCC
GTGTTTAGGTGCTAGGGGAGCTCACCTTTTACACATAAGGTTGAGAAAATGTCAGACATA
AATACAAAATAGACATTACAGTGGTGATATAGTAATCATTATGGCAGTGGGAAAGGAGTC
CAATTCATGGTCTAAAACTTTAAATGTCTTCTTAGGGGTCAGATTTTAATGACTATTTTA
CCCACAATAACTGACTATTTTGTTATAATAAAAATATATATATAAATATATATAAAACTT
TCTTTAACTAAACTCTGTAACTATGGGAATTATTTTCTTTACATAGTTGCACACACATAA
ACATATATATATTTAAAATATATTTTTTTCTTTTGCCACCTACTCTTTTTGTTTGTTTTT
TAAATTAAATATTAATTGACTAGACTTTATCTTCCTTAATCACATGAAGTGAAAATGGGG
ATACAGTGGTTGTGGAAAGAAACCTTTAGGAAAATTACATTATGAGTAAAAACATGGGCA
TGTTCTCCTCTCTTCTACTAAAGTTTTCAAATGGTTCCTGGTTGGTTTTTTGTGGGGGTT
TTTGGGGGGAGGGTGGGATTTTTTTGGTTGTTACCCTTGTTCTTGACATTGGTTTGGATT
TGGTCTCCACCTCTCCTTCAGCTTCTCCTTTCATTAATAGGCAAACAGGCAAAAGCTTCA
TGTGTATAAGTGTTTTCCCCTCAGTCTGCACACCTCTCATCTCTCATAGCTGCTCTGCAG
TATAGTTGCATAAATCTTCATGGTGAGCAACTAAGAAATTTTAGTGAAAAGTAGGTAACA
ATTTCAGAAATCAATTTCTCTGGTCTTTTATATTAATAATATTGTTTGGCTTCCCATTGC
TTTTTTGGAGTTGCTTATTAAATATGTGTTTTTGACAACCTCCTCATTACAGTTTCTTGA
ACAAATGAGTACTGGTTTGTAAAGAATTATGAACATTATCCATTCCATTTATGAGAAAGA
GGAGAACAGCTAATAAACTTTATTGTAAAATCTGTATGTTAAATGTGTCTTATATTCTGA
AAGAAAATTATTTTACAAGTTAACATTTTCTTGGAATAATTTGAGGCATCACATAATTTG
TAAACTGAATTCAAGAGTCATTAGGCAACCTAATGAAACTTCTGTGGGTTTTAGAGTTAA
AAATGTTAACATATTGAAATATATACCATAGCTGTTATATGCTAAATATAGTAAGTTCTT
ACCAAACAAACATATTAAAAGAAAATTATTGTAAAATTATCACAAGAACCCCAGAAATCA
CCTTACAGCAAGACCTCAGCATAAGCCATTTTGAAGTATTTACAGGGCAGATGTTGTAAA
ATATCAAGCATTTAAAATATGATGCCATTTATGTCTTTAAATGTATGTTACATTGCTTTC
TGAATGTCCTTGTTAAGTGATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAGTGTCTTACAAGAGTTGTTCATACATAATGATCATCACACTTTCTGAACTGAGGCC
GTGTTTAGGTGCTAGGGGAGCTCACCTTTTACACATAAGGTTGAGAAAATGTCAGACATA
AATACAAAATAGACATTACAGTGGTGATATAGTAATCATTATGGCAGTGGGAAAGGAGTC
CAATTCATGGTCTAAAACTTTAAATGTCTTCTTAGGGGTCAGATTTTAATGACTATTTTA
CCCACAATAACTGACTATTTTGTTATAATAAAAATATATATATAAATATATATAAAACTT
TCTTTAACTAAACTCTGTAACTATGGGAATTATTTTCTTTACATAGTTGCACACACATAA
ACATATATATATTTAAAATATATTTTTTTCTTTTGCCACCTACTCTTTTTGTTTGTTTTT
TAAATTAAATATTAATTGACTAGACTTTATCTTCCTTAATCACATGAAGTGAAAATGGGG
ATACAGTGGTTGTGGAAAGAAACCTTTAGGAAAATTACATTATGAGTAAAAACATGGGCA
TGTTCTCCTCTCTTCTACTAAAGTTTTCAAATGGTTCCTGGTTGGTTTTTTGTGGGGGTT
TTTGGGGGGAGGGTGGGATTTTTTTGGTTGTTACCCTTGTTCTTGACATTGGTTTGGATT
TGGTCTCCACCTCTCCTTCAGCTTCTCCTTTCATTAATAGGCAAACAGGCAAAAGCTTCA
TGTGTATAAGTGTTTTCCCCTCAGTCTGCACACCTCTCATCTCTCATAGCTGCTCTGCAG
TATAGTTGCATAAATCTTCATGGTGAGCAACTAAGAAATTTTAGTGAAAAGTAGGTAACA
ATTTCAGAAATCAATTTCTCTGGTCTTTTATATTAATAATATTGTTTGGCTTCCCATTGC
TTTTTTGGAGTTGCTTATTAAATATGTGTTTTTGACAACCTCCTCATTACAGTTTCTTGA
ACAAATGAGTACTGGTTTGTAAAGAATTATGAACATTATCCATTCCATTTATGAGAAAGA
GGAGAACAGCTAATAAACTTTATTGTAAAATCTGTATGTTAAATGTGTCTTATATTCTGA
AAGAAAATTATTTTACAAGTTAACATTTTCTTGGAATAATTTGAGGCATCACATAATTTG
TAAACTGAATTCAAGAGTCATTAGGCAACCTAATGAAACTTCTGTGGGTTTTAGAGTTAA
AAATGTTAACATATTGAAATATATACCATAGCTGTTATATGCTAAATATAGTAAGTTCTT
ACCAAACAAACATATTAAAAGAAAATTATTGTAAAATTATCACAAGAACCCCAGAAATCA
CCTTACAGCAAGACCTCAGCATAAGCCATTTTGAAGTATTTACAGGGCAGATGTTGTAAA
ATATCAAGCATTTAAAATATGATGCCATTTATGTCTTTAAATGTATGTTACATTGCTTTC
TGAATGTCCTTGTTAAGTGATTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1464, gnl|bosTau2|chr1 (42826295-42827710)
               

               
               1-1464, gnl|Hg17|chr3 (198259126-198257721)
               

               
               1-1464, gnl|Mm7|chr16 (31546941-31548208)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1464, gnl|bosTau2|chr1 (42826295-42827710)
               

               
               1-1464, gnl|Hg17|chr3 (198259126-198257721)
               

               
               1-1464, gnl|Mm7|chr16 (31546941-31548208)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               fco (0.471624)
               

               
               amn (0.417711)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               amn (0.417711)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	1-1464, gnl\|bosTau2\|chr1 (42826295-42827710)
	1-1464, gnl\|Hg17\|chr3 (198259126-198257721)
	1-1464, gnl\|Mm7\|chr16 (31546941-31548208)

	fco (0.471624)
	amn (0.417711)
	mgm (0.360685)
	fbs (0.350693)
	csp (0.322373)
	tes (0.207814)
	aor (0.195274)
	nep (0.183925)
	gul (0.177588)
	mga (0.160205)
	fat (0.147427)
	spl (0.143184)
	lyg (0.133103)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	med (0.116252)
	ldo (0.0970026)