Non-Coding RNA Search

Ss1.1-rret06_o5.5

Sequence:


               
               GGACAGCCGGGGCTATAGCCCAGAGAAGCTCCCAGCACAGCCCTCTACCAGAATCCATCC
GGCTGAAGGCTCCAGATGACTTTTGAGACATTCCTAGACAAGTTCATTCTTTGCTAAAGA
AAGGCCTGAATGACAGTGTCCAGGACGTCTGCACAACTGAGCAGTCGCTTGCTCCCTAAA
GTAACCTAATGGCAGCTTCAACAGGCAGGCAATAATCTCTTCCCAGACCACTGAAGTCAG
GAATACAGTGTCACCACCAGGGTTTGACAAAAGGGCCCGCGGGAATCTTACCATCGCCAA
CATTTCAGAACACCCTATTTCACGTAGCATAGCTCTCCCCTCCCCAAAGAGAGGTTACGG
AGGTACTGTAGCTTTTAGGGGGAAACAATGTTAACATATCACAGGTCAAGTTGAAGTCAC
TGTCTGTTTAGGCACTAAAAATCGGTGTTGTCACTCACTGTGTATTACCAGTATTTCCTT
GCTTTCTTGATTTCACCAAAACCAGATTTAATTTAAAGGACCGCATTACTTTTTCAAAGG
GAAAGAGACAATTCATTGTACATAATGTATACACACACACACACACACACACACAATAAT
ACCTATAGAAATATTAATCCATCATAGCAGGAAAAAAAAAAAAACGAAAAACAAAGTATT
GGAAGTTGGAGGTGAGTGTGTGCGTCCGTGACCCGCTGTGACTCCCGAGCGCGCAGTCTC
CTAGGTTAACCCTCACAGTACATTCTGTTTTAATGATACTGTAGGTTCACCTGTTTTGGT
TTTGGTTTCTTTAATTTCCCCACAAATAACAAGACCCACAGAAGTGACTCTAGCTATTTA
ACAGTTCTGTTCTTTTATATGCAGCAAACACACCGTACATTTCCGAAGAGGCTTCAGCCT
GAAGGCGTTTTCCAATGATGTTAGTGCACAAATGCTTTAAATTAGACTGGAACTGCCAGA
ATCAAATGTAAATGATGAATTTCTCGTACCCCTATTGCATGGTATCAATTTTTAATAAAT
TGTTGCAAATTTGTTTTTATGAATAAAAGGAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAGCCGGGGCTATAGCCCAGAGAAGCTCCCAGCACAGCCCTCTACCAGAATCCATCC
GGCTGAAGGCTCCAGATGACTTTTGAGACATTCCTAGACAAGTTCATTCTTTGCTAAAGA
AAGGCCTGAATGACAGTGTCCAGGACGTCTGCACAACTGAGCAGTCGCTTGCTCCCTAAA
GTAACCTAATGGCAGCTTCAACAGGCAGGCAATAATCTCTTCCCAGACCACTGAAGTCAG
GAATACAGTGTCACCACCAGGGTTTGACAAAAGGGCCCGCGGGAATCTTACCATCGCCAA
CATTTCAGAACACCCTATTTCACGTAGCATAGCTCTCCCCTCCCCAAAGAGAGGTTACGG
AGGTACTGTAGCTTTTAGGGGGAAACAATGTTAACATATCACAGGTCAAGTTGAAGTCAC
TGTCTGTTTAGGCACTAAAAATCGGTGTTGTCACTCACTGTGTATTACCAGTATTTCCTT
GCTTTCTTGATTTCACCAAAACCAGATTTAATTTAAAGGACCGCATTACTTTTTCAAAGG
GAAAGAGACAATTCATTGTACATAATGTATACACACACACACACACACACACACAATAAT
ACCTATAGAAATATTAATCCATCATAGCAGGAAAAAAAAAAAAACGAAAAACAAAGTATT
GGAAGTTGGAGGTGAGTGTGTGCGTCCGTGACCCGCTGTGACTCCCGAGCGCGCAGTCTC
CTAGGTTAACCCTCACAGTACATTCTGTTTTAATGATACTGTAGGTTCACCTGTTTTGGT
TTTGGTTTCTTTAATTTCCCCACAAATAACAAGACCCACAGAAGTGACTCTAGCTATTTA
ACAGTTCTGTTCTTTTATATGCAGCAAACACACCGTACATTTCCGAAGAGGCTTCAGCCT
GAAGGCGTTTTCCAATGATGTTAGTGCACAAATGCTTTAAATTAGACTGGAACTGCCAGA
ATCAAATGTAAATGATGAATTTCTCGTACCCCTATTGCATGGTATCAATTTTTAATAAAT
TGTTGCAAATTTGTTTTTATGAATAAAAGGAAGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-185, - strand, RNAz p=0.574596

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-185, - strand, RNAz p=0.574596

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1056, gnl|bosTau2|chr8 (33421858-33422918)
               

               
               1-1056, gnl|Hg17|chr9 (98130979-98129933)
               

               
               1-1056, gnl|Mm7|chr4 (46677228-46676134)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr8 (33421858-33422918)
               

               
               1-1056, gnl|Hg17|chr9 (98130979-98129933)
               

               
               1-1056, gnl|Mm7|chr4 (46677228-46676134)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fco (0.943248)
               

               
               fhi (0.339155)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.943248)
               

               
               fhi (0.339155)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

	1-1056, gnl\|bosTau2\|chr8 (33421858-33422918)
	1-1056, gnl\|Hg17\|chr9 (98130979-98129933)
	1-1056, gnl\|Mm7\|chr4 (46677228-46676134)

	fco (0.943248)
	fhi (0.339155)
	ret (0.257467)
	cbe (0.239234)
	fcc (0.197785)
	fbs (0.175346)
	liv (0.146284)
	hyp (0.142837)
	ecc (0.115035)