Non-Coding RNA Search

Ss1.1-rret07_e4.5

Sequence:


               
               ATTAAGTAGCCATTAGAAAAGGTCAGGAGACTTATTTCAGAAAAAAAAAATTAAGTCTTT
CATGCAGGATAATGGATCTGACTAATGTATTGTCACAGACAAGTATGAGTAGTTTTTTTT
TTGTTTGTTTGTTTAAATAGGTAAGCAAAATAGTATATACTTTATTACCAGTTGATCACC
AGTACCTTGACTTCTTTGTTACAGTGCTAATGTCTGTTTTTGTGCAGTTATCCATTACAA
AGCAGGGTGGAAGTTCAGTATTTTGGCATTTTAAAAAAGATTAGTTATATAATGTCTGCT
TCCAGCCAGTGAGAAACATCTAGCCATACCTTTCTTATGCAAGCCATTCAGTTATCAGGA
CTGTGAATTAACACTGTATGAATAAATTTCTGTACACCTTATTGTTTGGCCAGAAGGCCA
CCAAGTGTACTTATATGTAATCCTTAAATTTTAAAGTAGCTGTAATTTTTAAATCTTTCT
AACTTTTCTTAAACCACTAAAATTAAGCTCTTAACTATTTAGTCAACTATCCTCAGCTGT
ATTCGTACTCAATTGTCAGTATGGCACAGATTACTGTATTAAAATATTCTCCTTTCGTCT
TCATTCATATTTACCTTCTGAGGTAATTTTTTAACTTAATGTGTTACTACAAAGATTTGC
AGATCTTTAATCAAGCACTATGTTAATACTGTAATATCAAAATACTATGTTGCATTATTT
AAAATGTTCAAATTGAATACATTAAAAGGAAGTTTTTAAATGCTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAGTAGCCATTAGAAAAGGTCAGGAGACTTATTTCAGAAAAAAAAAATTAAGTCTTT
CATGCAGGATAATGGATCTGACTAATGTATTGTCACAGACAAGTATGAGTAGTTTTTTTT
TTGTTTGTTTGTTTAAATAGGTAAGCAAAATAGTATATACTTTATTACCAGTTGATCACC
AGTACCTTGACTTCTTTGTTACAGTGCTAATGTCTGTTTTTGTGCAGTTATCCATTACAA
AGCAGGGTGGAAGTTCAGTATTTTGGCATTTTAAAAAAGATTAGTTATATAATGTCTGCT
TCCAGCCAGTGAGAAACATCTAGCCATACCTTTCTTATGCAAGCCATTCAGTTATCAGGA
CTGTGAATTAACACTGTATGAATAAATTTCTGTACACCTTATTGTTTGGCCAGAAGGCCA
CCAAGTGTACTTATATGTAATCCTTAAATTTTAAAGTAGCTGTAATTTTTAAATCTTTCT
AACTTTTCTTAAACCACTAAAATTAAGCTCTTAACTATTTAGTCAACTATCCTCAGCTGT
ATTCGTACTCAATTGTCAGTATGGCACAGATTACTGTATTAAAATATTCTCCTTTCGTCT
TCATTCATATTTACCTTCTGAGGTAATTTTTTAACTTAATGTGTTACTACAAAGATTTGC
AGATCTTTAATCAAGCACTATGTTAATACTGTAATATCAAAATACTATGTTGCATTATTT
AAAATGTTCAAATTGAATACATTAAAAGGAAGTTTTTAAATGCTGTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               321-479, - strand, RNAz p=0.938689
               

               
               518-637, - strand, RNAz p=0.761279

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-479, - strand, RNAz p=0.938689
               

               
               518-637, - strand, RNAz p=0.761279

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               128-768, gnl|bosTau2|chr19 (5456054-5456686)
               

               
               128-768, gnl|Hg17|chr17 (57376082-57375449)
               

               
               128-768, gnl|Mm7|chr11 (86338332-86337701)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-768, gnl|bosTau2|chr19 (5456054-5456686)
               

               
               128-768, gnl|Hg17|chr17 (57376082-57375449)
               

               
               128-768, gnl|Mm7|chr11 (86338332-86337701)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mgm (0.180343)
               

               
               bfe (0.149858)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               bfe (0.149858)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	321-479, - strand, RNAz p=0.938689
	518-637, - strand, RNAz p=0.761279

	128-768, gnl\|bosTau2\|chr19 (5456054-5456686)
	128-768, gnl\|Hg17\|chr17 (57376082-57375449)
	128-768, gnl\|Mm7\|chr11 (86338332-86337701)

	mgm (0.180343)
	bfe (0.149858)
	ret (0.128733)
	clu (0.119646)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)