Non-Coding RNA Search

Ss1.1-rret07_f5.5

Sequence:


               
               ACTTTAAGTCTCTGTTCAGAAGTCACCTTCTTTGGAGTTTCTGTTGTGGATCAGTGGTAA
TGAACCTGACTAGTATCCATGAGCACGCACGTTTGATCCCTGGTCCCCCTCAGTAGGTTA
AGGATCTGGTGTTGCTGTGAGCCATAGTGTTGGTCACAGACATTGCCGTGGCTGTGGCGT
AGGCCTGCAGCTGCAGCTCTGATTTGACCCCTCACCTGGGAACTTCCATATGCCGCACAT
GTGACCCCCCCCAAAGAAAGTCACCTTCTTCACAAATATGCCCAGAATTCCCCCTTTGCT
CTTCATTCTAATCCAGACTGTGCTCTGATTAGTCCCATGTGCTTACCTTTATTCTGGCAG
ATATCATACTCTATTTTAATTTTTTATCTGTCTCCCCATTAAAGGCAACAACCCAATTTT
AGCCAAGTTTGTGTGTTAGGTTCCTAGGATAGTACCTTTCAGATCATTGATACTAAACAT
TCGTAGAATGAATGACTAGGCATTTTAGAGTAATATGATTCAGATATTTTTATACATATT
TATTATGTGTTGAGTTACTGTAAGGTGTATAAAATTATGGGAGAAATCACAAAAACTATT
GAGCTATACAGCTGCTTTCTGGAAAGAGTATATGTTAACTAATGTTTTATGATACACTTT
ATTTTAAAATAATATTTTATAATATACTTACTCGGGTAAAGAAAATATTTTCTGTGGAGC
ATCATGTTTTGGCTGAATTAAACTCAGTAAGTTATGTATCAGAAATTGATGATTTGTAGT
ATTAATTATATTTTGAAAGGTTTTTTTGTTTGGTAGTTTTACATACTAGAAACATTATTT
CTCTGAATTGCCCTTCACATTTGAAGTTTCCAAACTTCAATAGTATTTTCCTTTCAAGAT
GATTTTAATAAAATATTTGAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTAAGTCTCTGTTCAGAAGTCACCTTCTTTGGAGTTTCTGTTGTGGATCAGTGGTAA
TGAACCTGACTAGTATCCATGAGCACGCACGTTTGATCCCTGGTCCCCCTCAGTAGGTTA
AGGATCTGGTGTTGCTGTGAGCCATAGTGTTGGTCACAGACATTGCCGTGGCTGTGGCGT
AGGCCTGCAGCTGCAGCTCTGATTTGACCCCTCACCTGGGAACTTCCATATGCCGCACAT
GTGACCCCCCCCAAAGAAAGTCACCTTCTTCACAAATATGCCCAGAATTCCCCCTTTGCT
CTTCATTCTAATCCAGACTGTGCTCTGATTAGTCCCATGTGCTTACCTTTATTCTGGCAG
ATATCATACTCTATTTTAATTTTTTATCTGTCTCCCCATTAAAGGCAACAACCCAATTTT
AGCCAAGTTTGTGTGTTAGGTTCCTAGGATAGTACCTTTCAGATCATTGATACTAAACAT
TCGTAGAATGAATGACTAGGCATTTTAGAGTAATATGATTCAGATATTTTTATACATATT
TATTATGTGTTGAGTTACTGTAAGGTGTATAAAATTATGGGAGAAATCACAAAAACTATT
GAGCTATACAGCTGCTTTCTGGAAAGAGTATATGTTAACTAATGTTTTATGATACACTTT
ATTTTAAAATAATATTTTATAATATACTTACTCGGGTAAAGAAAATATTTTCTGTGGAGC
ATCATGTTTTGGCTGAATTAAACTCAGTAAGTTATGTATCAGAAATTGATGATTTGTAGT
ATTAATTATATTTTGAAAGGTTTTTTTGTTTGGTAGTTTTACATACTAGAAACATTATTT
CTCTGAATTGCCCTTCACATTTGAAGTTTCCAAACTTCAATAGTATTTTCCTTTCAAGAT
GATTTTAATAAAATATTTGAACAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               321-922, gnl|bosTau2|chr1 (14772328-14771696)
               

               
               321-922, gnl|Hg17|chr21 (14657630-14658576)
               

               
               321-922, gnl|Mm7|chr16 (75751621-75752214)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               321-922, gnl|bosTau2|chr1 (14772328-14771696)
               

               
               321-922, gnl|Hg17|chr21 (14657630-14658576)
               

               
               321-922, gnl|Mm7|chr16 (75751621-75752214)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               lin (0.291206)
               

               
               ret (0.257467)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               thg (0.126791)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               thg (0.126791)

	321-922, gnl\|bosTau2\|chr1 (14772328-14771696)
	321-922, gnl\|Hg17\|chr21 (14657630-14658576)
	321-922, gnl\|Mm7\|chr16 (75751621-75752214)

	lin (0.291206)
	ret (0.257467)
	cje (0.165235)
	ski (0.146735)
	thg (0.126791)