Non-Coding RNA Search

Ss1.1-rret08_h13.5

Sequence:


               
               TAAACTTAGATACCTGGACCTGGTCTGGAAGGATTCCCGTTAATGGAGAAAACCCCAAAC
ATCGGTCATGGCATACCTTAACACCAATAGCAGATGATACGCTTTTCCTATTTGGTGGAC
TAAGTGCAGACAATGTTCCACTAAGTGATGGTTGGATTCATAATGTCATAACAAATTGTT
GGAAACAACTAACACATTTACCTAAAACAAAACCCAGGTTATGGCACACAGCCTGCTTGG
GAAAAGAAAATGAAATAATGGTATTTGGTGGGAGCAAAGATGATTTACTGTCCTTGGATA
CAGGTCATTGTAATGATTTACTGATCTTTCAAACACAGCCTTATTCACTACTCAGGTTAT
GCCTTGACTGCATTGGTAAAAATGCTATCATTTTAGAAAGTCAGATATCTTTATTACCTC
CGAAACTTCTCCAACAAGTACTCAAAAAAATAACATTTTGGACTGCAGCTAATCACCGAG
AAGAACAAAGGGCCCAAAAAGAAGAAACCGAAAATAAGTATCAGTGGATCAGTGGCAATT
AAGTTGTTATATATTCTATACATTTAATATGTTCAAACATTGTAATCAGACTGTATATTT
ACCTCCCTCTCAAATTGGAGGCTTTATTTAGAGGATAAAGTTTGAAACAAAAATTCTATG
TTAAAGTGATTTTATGGCATGAGATATGTAGGAAGATGTTAATGGCAGATTAATTTATAT
TTGTAAATCAATTTCCTAATAAGCTGCAGAAAAAATATACTTTCTGAAAGTAAGTACAAT
TGTAAGAGACTTTAACTCACTGTGTCCTCTTTACTGGAAAGGTGATAGAAATTTGAGGAG
AATAGGAAATTACCCCCAAGGACTTTATGAATCCCCCAACATAGATATATAAAAACATCT
CCTATCAACTTTCAGAAAGAATAGATTTTTCTCAAGTCACTTTAAAATTACATAAAGCTT
TCCATTAAATAACTCAAGTGTTTAAATACCGAATATAGCTGGCCAAAATGATAAAACAGG
CAAACACCAGTGTGGTATTAAATATTGAACTCCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAACTTAGATACCTGGACCTGGTCTGGAAGGATTCCCGTTAATGGAGAAAACCCCAAAC
ATCGGTCATGGCATACCTTAACACCAATAGCAGATGATACGCTTTTCCTATTTGGTGGAC
TAAGTGCAGACAATGTTCCACTAAGTGATGGTTGGATTCATAATGTCATAACAAATTGTT
GGAAACAACTAACACATTTACCTAAAACAAAACCCAGGTTATGGCACACAGCCTGCTTGG
GAAAAGAAAATGAAATAATGGTATTTGGTGGGAGCAAAGATGATTTACTGTCCTTGGATA
CAGGTCATTGTAATGATTTACTGATCTTTCAAACACAGCCTTATTCACTACTCAGGTTAT
GCCTTGACTGCATTGGTAAAAATGCTATCATTTTAGAAAGTCAGATATCTTTATTACCTC
CGAAACTTCTCCAACAAGTACTCAAAAAAATAACATTTTGGACTGCAGCTAATCACCGAG
AAGAACAAAGGGCCCAAAAAGAAGAAACCGAAAATAAGTATCAGTGGATCAGTGGCAATT
AAGTTGTTATATATTCTATACATTTAATATGTTCAAACATTGTAATCAGACTGTATATTT
ACCTCCCTCTCAAATTGGAGGCTTTATTTAGAGGATAAAGTTTGAAACAAAAATTCTATG
TTAAAGTGATTTTATGGCATGAGATATGTAGGAAGATGTTAATGGCAGATTAATTTATAT
TTGTAAATCAATTTCCTAATAAGCTGCAGAAAAAATATACTTTCTGAAAGTAAGTACAAT
TGTAAGAGACTTTAACTCACTGTGTCCTCTTTACTGGAAAGGTGATAGAAATTTGAGGAG
AATAGGAAATTACCCCCAAGGACTTTATGAATCCCCCAACATAGATATATAAAAACATCT
CCTATCAACTTTCAGAAAGAATAGATTTTTCTCAAGTCACTTTAAAATTACATAAAGCTT
TCCATTAAATAACTCAAGTGTTTAAATACCGAATATAGCTGGCCAAAATGATAAAACAGG
CAAACACCAGTGTGGTATTAAATATTGAACTCCTAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               30-146, gnl|bosTau2|chr10 (30051273-30051389)
               

               
               30-146, gnl|Hg17|chr14 (49269170-49269286)
               

               
               30-146, gnl|Mm7|chr12 (67200996-67201112)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-146, gnl|bosTau2|chr10 (30051273-30051389)
               

               
               30-146, gnl|Hg17|chr14 (49269170-49269286)
               

               
               30-146, gnl|Mm7|chr12 (67200996-67201112)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               ret (0.257467)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               ste (0.135208)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               ste (0.135208)

	30-146, gnl\|bosTau2\|chr10 (30051273-30051389)
	30-146, gnl\|Hg17\|chr14 (49269170-49269286)
	30-146, gnl\|Mm7\|chr12 (67200996-67201112)