Non-Coding RNA Search

Ss1.1-rret10_m22.5

Sequence:


               
               TTCTGCCAAAATCAGGCTCGGTTACTCATTTGCCAAGCTTTGTGGAGGATTACAGATAAT
ATAAATTTGACAAGGTCTGTGCTCAAAGTTGTGAGATCTCTTGAAGATATTTCTGCAATA
TTTTTCATCATTCATTGTTTACTAAAGCTGCAGCCAAAAATATTTTTTCTTTCCTTACTC
TAAACTGAGCCCTTTAGCAAGTGAAGGGACCAGATTTCCTAACTAAAGGATGTTATGCAT
TTTCCTTATATTTCTACCATATCACTGTAAAGAAGGGGGAAAACCCAGCCAGCTATCTTT
CTTTTATTACTTTCTACTCATAACTTTAGGTTTTTTAACTGATCTCCAAAAAATAAGCTG
TTTTCATTAATCAATTCTATAATCTCTTCTTGTAATTTAAATAGAAAATGAACAGAGCCC
TTTTCCATGTAAGACCCTGCAACTGTGTGAAGAAATGACATTTATAAGGAGTTTAATTAT
CTATGAACCAACAACATTGAATTGATGCTCCTTTACAATCCAAGAAAGTCTATGACTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGCCAAAATCAGGCTCGGTTACTCATTTGCCAAGCTTTGTGGAGGATTACAGATAAT
ATAAATTTGACAAGGTCTGTGCTCAAAGTTGTGAGATCTCTTGAAGATATTTCTGCAATA
TTTTTCATCATTCATTGTTTACTAAAGCTGCAGCCAAAAATATTTTTTCTTTCCTTACTC
TAAACTGAGCCCTTTAGCAAGTGAAGGGACCAGATTTCCTAACTAAAGGATGTTATGCAT
TTTCCTTATATTTCTACCATATCACTGTAAAGAAGGGGGAAAACCCAGCCAGCTATCTTT
CTTTTATTACTTTCTACTCATAACTTTAGGTTTTTTAACTGATCTCCAAAAAATAAGCTG
TTTTCATTAATCAATTCTATAATCTCTTCTTGTAATTTAAATAGAAAATGAACAGAGCCC
TTTTCCATGTAAGACCCTGCAACTGTGTGAAGAAATGACATTTATAAGGAGTTTAATTAT
CTATGAACCAACAACATTGAATTGATGCTCCTTTACAATCCAAGAAAGTCTATGACTAAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-502, gnl|bosTau2|chr1 (56915159-56915657)
               

               
               1-502, gnl|Hg17|chr3 (180043687-180044192)
               

               
               1-502, gnl|Mm7|chr3 (32007831-32008303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-502, gnl|bosTau2|chr1 (56915159-56915657)
               

               
               1-502, gnl|Hg17|chr3 (180043687-180044192)
               

               
               1-502, gnl|Mm7|chr3 (32007831-32008303)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.169578)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ret (0.128733)

	1-502, gnl\|bosTau2\|chr1 (56915159-56915657)
	1-502, gnl\|Hg17\|chr3 (180043687-180044192)
	1-502, gnl\|Mm7\|chr3 (32007831-32008303)