Non-Coding RNA Search

Ss1.1-rret10_o3.5

Sequence:


               
               CACCCATACTTCCACGACCTGGAGAGGTGCAAGGAAAACCTGGATTCCCATCTGCCACCC
AGCCAGAACAGCTCAGAAATGAATACAGCCTGAGGGCCCAGCCGCTGCCTGAGCCGATCG
TCCGGAGAACCTCCTTGGTGGCTGAGGGTCCCCTAAGTAAGCCCTGCAGAAGCTGTACAG
GATCACTGGCTGGGGGCCTTCTAGCTACTGTCTTCTGGATGGGCTCTGCTTCTCTGAGGA
AACGCCTAGTTTACTGTTTTGAAATCAATGCAAGCGTGATTGCAGCTTTATGTTCATTCG
TTTGTTTGTTATTTGTTTGTTTGTTGTTTGTTTCAAGAACCTGGAAAAATTCCAGAAGAG
AAGCTGCTGACCAATTGTGCTGCCATTGCATTTTTCTGATCTTGAATGCTGCCAGTGTGA
AGTGAGCAATCCAGGCACAGCTGAGTTATGATGTAATCTCTCTGCAGCTGCCGGAGCCTG
ATTTGGTACTTTTGAGTGAGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGATTCTTGATCTCTTAAAAAAGTGTTACTTCTGTAAACAACATGAATAATTAAGT
TTTTAAGGACTCACAGTGACCGCTAAAATTCCAAGTATCTGTGGACTGAAGGTGATTCAC
CAAAATGGGCTTCTCAAATTAGAAAGTTGAGCCTATGTCCTTAGCATTTCTTTTCTGGCC
AAAAGCAGTTAATTTGCTAGTTGTAAAGGGTTCACTATCTAGAGGCAGTTGAATACGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCATACTTCCACGACCTGGAGAGGTGCAAGGAAAACCTGGATTCCCATCTGCCACCC
AGCCAGAACAGCTCAGAAATGAATACAGCCTGAGGGCCCAGCCGCTGCCTGAGCCGATCG
TCCGGAGAACCTCCTTGGTGGCTGAGGGTCCCCTAAGTAAGCCCTGCAGAAGCTGTACAG
GATCACTGGCTGGGGGCCTTCTAGCTACTGTCTTCTGGATGGGCTCTGCTTCTCTGAGGA
AACGCCTAGTTTACTGTTTTGAAATCAATGCAAGCGTGATTGCAGCTTTATGTTCATTCG
TTTGTTTGTTATTTGTTTGTTTGTTGTTTGTTTCAAGAACCTGGAAAAATTCCAGAAGAG
AAGCTGCTGACCAATTGTGCTGCCATTGCATTTTTCTGATCTTGAATGCTGCCAGTGTGA
AGTGAGCAATCCAGGCACAGCTGAGTTATGATGTAATCTCTCTGCAGCTGCCGGAGCCTG
ATTTGGTACTTTTGAGTGAGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGATTCTTGATCTCTTAAAAAAGTGTTACTTCTGTAAACAACATGAATAATTAAGT
TTTTAAGGACTCACAGTGACCGCTAAAATTCCAAGTATCTGTGGACTGAAGGTGATTCAC
CAAAATGGGCTTCTCAAATTAGAAAGTTGAGCCTATGTCCTTAGCATTTCTTTTCTGGCC
AAAAGCAGTTAATTTGCTAGTTGTAAAGGGTTCACTATCTAGAGGCAGTTGAATACGCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               274-388, + strand, RNAz p=0.68008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-388, + strand, RNAz p=0.68008

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC052264, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC052264, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr4 (4264385-4263636)
               

               
               1-780, gnl|Hg17|chr7 (91889197-91888435)
               

               
               1-780, gnl|Mm7|chr5 (3526705-3527454)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr4 (4264385-4263636)
               

               
               1-780, gnl|Hg17|chr7 (91889197-91888435)
               

               
               1-780, gnl|Mm7|chr5 (3526705-3527454)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	1-780, gnl\|bosTau2\|chr4 (4264385-4263636)
	1-780, gnl\|Hg17\|chr7 (91889197-91888435)
	1-780, gnl\|Mm7\|chr5 (3526705-3527454)