Non-Coding RNA Search

Ss1.1-rret10_o6.5

Sequence:


               
               AAATCACTTACAGTTGATGATGTGGAACCCTGATGACTGTTTCAGTTAATATGCTGCACA
CCACGGTTTATTGAACCTCATCTAGAAAGTATCAAGGCAGAGGAATGCTCCTGACTTAGT
CAGACAAATAAGTTCAACTGATTTCCTGTGATAACGCTGATGATATCTATTACCTGGGGG
AGGATGGGTTGCAGAAGACCAGAGCATTTTCACACAGAAGGTAGAATACTGATGCAGTTA
TTCTTTTCCTTTGAGAATATTGTCTTATAAAGAACGTGATTCCCTGAGGTCTCTGGAAGC
TCAAAAGCTCAGACTCCTGTTCTTGAAACACTTCAGCTCTGAAACTAAAACATGACAGAT
TAATAATAAATTAAACCAACCAGTGATAAACACTACCCAGTCCCACTGCCGACAAACGTG
TTTGAATTCACCTTACCAATATTAATCCCGGCGTGCGGAAAATGGAACAGTAACTCTATG
TGAACCCGGATAACATTTTGTAACATTGTGCTGCCTTGTAGTTTGTAATGTGAGTTCTAT
CAGTATTTATGTTGAAATTTCTAACATAAAATCTAGTCTCTATCCTGTTAATTTAATTTT
TAAATGCTTTATCCATTTGTGCAAAGGTAAACACAGATTGTATCTTTTTTAATGGTACGG
CATAAAAAGTAACCCTAAAGTGAAGTGGCTCTATACTGTTTTATAGAGTACTTTAACATG
TATAGATATCTTGTAAACTTGTATTGTGGATGTGTAAATAATATGTACTTTGGGTTTTTA
ACACAGCATGTAAAGTCAAAATAAAATATACAAATCGTTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCACTTACAGTTGATGATGTGGAACCCTGATGACTGTTTCAGTTAATATGCTGCACA
CCACGGTTTATTGAACCTCATCTAGAAAGTATCAAGGCAGAGGAATGCTCCTGACTTAGT
CAGACAAATAAGTTCAACTGATTTCCTGTGATAACGCTGATGATATCTATTACCTGGGGG
AGGATGGGTTGCAGAAGACCAGAGCATTTTCACACAGAAGGTAGAATACTGATGCAGTTA
TTCTTTTCCTTTGAGAATATTGTCTTATAAAGAACGTGATTCCCTGAGGTCTCTGGAAGC
TCAAAAGCTCAGACTCCTGTTCTTGAAACACTTCAGCTCTGAAACTAAAACATGACAGAT
TAATAATAAATTAAACCAACCAGTGATAAACACTACCCAGTCCCACTGCCGACAAACGTG
TTTGAATTCACCTTACCAATATTAATCCCGGCGTGCGGAAAATGGAACAGTAACTCTATG
TGAACCCGGATAACATTTTGTAACATTGTGCTGCCTTGTAGTTTGTAATGTGAGTTCTAT
CAGTATTTATGTTGAAATTTCTAACATAAAATCTAGTCTCTATCCTGTTAATTTAATTTT
TAAATGCTTTATCCATTTGTGCAAAGGTAAACACAGATTGTATCTTTTTTAATGGTACGG
CATAAAAAGTAACCCTAAAGTGAAGTGGCTCTATACTGTTTTATAGAGTACTTTAACATG
TATAGATATCTTGTAAACTTGTATTGTGGATGTGTAAATAATATGTACTTTGGGTTTTTA
ACACAGCATGTAAAGTCAAAATAAAATATACAAATCGTTAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               674-793, + strand, RNAz p=0.779206

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               674-793, + strand, RNAz p=0.779206

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_153616, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_153616, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-820, gnl|bosTau2|chr10 (43491258-43490452)
               

               
               5-820, gnl|Hg17|chr15 (45852890-45853710)
               

               
               5-820, gnl|Mm7|chr2 (124407836-124408623)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-820, gnl|bosTau2|chr10 (43491258-43490452)
               

               
               5-820, gnl|Hg17|chr15 (45852890-45853710)
               

               
               5-820, gnl|Mm7|chr2 (124407836-124408623)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               lin (0.436808)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

	5-820, gnl\|bosTau2\|chr10 (43491258-43490452)
	5-820, gnl\|Hg17\|chr15 (45852890-45853710)
	5-820, gnl\|Mm7\|chr2 (124407836-124408623)

	lin (0.436808)
	fce (0.271592)
	ret (0.257467)
	spc (0.226732)
	fbs (0.175346)
	sin (0.174948)
	liv (0.146284)
	ova (0.129132)
	thg (0.126791)