Ss1.1-rret12_a12.5
|
GCAGTCAGATTCTTAATCCACTGCATTACAGCAGGACCTCCTCTCAGTATTTTTTATGAA
GAAATCATACTGTTTGTGTGTAGAAACAGAAGTGGTTAACAAGTTAGCAGAAATGGTAGG
TGCCTACTTACCCTTTCATAAGAAAAAAGGTAATTAAAAAGAATCTTCATAAGTGATACA
CCATCTCTAAAAAGTATTCGTTAGGGATATTTAGTGACACCATGAGAGAAACAAAATGTA
AAAAGTAAAATGTATGATTTGGAGTTTAAGTGACTTTTAACAGAGAATTTATCTAGAAAA
ATATCAGTAAGGTATATAGCAACCTTTGATCTTTGACTTCGCGCTTTCATTATAGACCGC
TTTCCACTATTAAAAACTCAGCTCAATATTTCAACCAAGAGAGGAAGAGATCCTGAAAGC
ACGCAGGAAAAGTAGAGGTAAAACTATAAAGGGCTCTTCTACATTATAATACGAAAAGCA
CACTTTCAAAGTGTAAAGACAGTATTTTGTATAGTATTTTGCTAAAACTTTTTATATTTT
GTAAATCCTGTATTTAAGTTATATGATATATATTGAAACTTAAGATATTTATTGCCAAAG
CCCGAGAGCTAAGGTAATAAAATTATCTCAGAAATAATATTAGCTTCTGTTTCCTTTCAT
ACTATTAAGTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAGTCAGATTCTTAATCCACTGCATTACAGCAGGACCTCCTCTCAGTATTTTTTATGAA
GAAATCATACTGTTTGTGTGTAGAAACAGAAGTGGTTAACAAGTTAGCAGAAATGGTAGG
TGCCTACTTACCCTTTCATAAGAAAAAAGGTAATTAAAAAGAATCTTCATAAGTGATACA
CCATCTCTAAAAAGTATTCGTTAGGGATATTTAGTGACACCATGAGAGAAACAAAATGTA
AAAAGTAAAATGTATGATTTGGAGTTTAAGTGACTTTTAACAGAGAATTTATCTAGAAAA
ATATCAGTAAGGTATATAGCAACCTTTGATCTTTGACTTCGCGCTTTCATTATAGACCGC
TTTCCACTATTAAAAACTCAGCTCAATATTTCAACCAAGAGAGGAAGAGATCCTGAAAGC
ACGCAGGAAAAGTAGAGGTAAAACTATAAAGGGCTCTTCTACATTATAATACGAAAAGCA
CACTTTCAAAGTGTAAAGACAGTATTTTGTATAGTATTTTGCTAAAACTTTTTATATTTT
GTAAATCCTGTATTTAAGTTATATGATATATATTGAAACTTAAGATATTTATTGCCAAAG
CCCGAGAGCTAAGGTAATAAAATTATCTCAGAAATAATATTAGCTTCTGTTTCCTTTCAT
ACTATTAAGTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
592-666, AJ670982 KN224 Bos taurus cDNA clone KN224-005_B21, mRNA sequence
(emb|AJ670982.1|), blast E-value=1e-28, identity=97.33% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
592-666, AJ670982 KN224 Bos taurus cDNA clone KN224-005_B21, mRNA sequence
(emb|AJ670982.1|), blast E-value=1e-28, identity=97.33% |
|
41-672, gnl|bosTau2|chr29 (35878874-35879477) |
|
41-672, gnl|canFam2|chr14 (62366350-62367504) |
|
41-672, gnl|dasNov1|scaffold_737 (69426-68312) |
|
41-672, gnl|echTel1|scaffold_317402 (30452-29384) |
|
41-672, gnl|hg17|chr7 (120573655-120574771) |
|
41-672, gnl|Hg17|chr7 (120573808-120574425) |
|
41-672, gnl|loxAfr1|scaffold_24927 (18302-19423) |
|
41-672, gnl|mm7|chr6 (22234843-22235974) |
|
41-672, gnl|Mm7|chr6 (22234996-22235593) |
|
41-672, gnl|monDom2|scaffold_22 (25721376-25720291) |
|
41-672, gnl|oryCun1|scaffold_137268 (13204-14258) |
|
41-672, gnl|panTro1|chr6 (122916184-122917297) |
|
41-672, gnl|rheMac2|chr3 (158861170-158862279) |
|
41-672, gnl|rn3|chr4 (48850930-48852063) |
|
41-672, gnl|xenTro1|scaffold_17 (3382345-3383585) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
41-672, gnl|bosTau2|chr29 (35878874-35879477) |
|
41-672, gnl|canFam2|chr14 (62366350-62367504) |
|
41-672, gnl|dasNov1|scaffold_737 (69426-68312) |
|
41-672, gnl|echTel1|scaffold_317402 (30452-29384) |
|
41-672, gnl|hg17|chr7 (120573655-120574771) |
|
41-672, gnl|Hg17|chr7 (120573808-120574425) |
|
41-672, gnl|loxAfr1|scaffold_24927 (18302-19423) |
|
41-672, gnl|mm7|chr6 (22234843-22235974) |
|
41-672, gnl|Mm7|chr6 (22234996-22235593) |
|
41-672, gnl|monDom2|scaffold_22 (25721376-25720291) |
|
41-672, gnl|oryCun1|scaffold_137268 (13204-14258) |
|
41-672, gnl|panTro1|chr6 (122916184-122917297) |
|
41-672, gnl|rheMac2|chr3 (158861170-158862279) |
|
41-672, gnl|rn3|chr4 (48850930-48852063) |
|
41-672, gnl|xenTro1|scaffold_17 (3382345-3383585) |
