Non-Coding RNA Search

Ss1.1-rret12_c4.5

Sequence:


               
               GTCTCTTTGAATGTCTCTTTGTTTAAAAACAACATAACTTTAGAAAACAAAGCATTAAAA
AAAAAGTCCATCAGTATTATGGGGAGTGTGTAAATAAGTAAATATAATATTTCATGCTTT
ATTTTTCAAAGAAAAGGTTATGCTGTTACAAGTATAGTTTATGCATATAGGTAATACTTC
TGAATTAAATTAATATTTGACTGATTGTAGTAACTGTGAAAAATAAAAAATGGTGTTACG
TTTGCCTGTGAGCCCTTGAACTGTTTTCTCTGCTACGTAATTGGGGAAAAAAAAGTCTAA
CACTAACATATAAACCTGCTTTCCTTGTAAATTATTTTACCATTTTTGCTAAACTTTTAA
AGTCACATTCCTAGTATATTTCTAAGACACAGTTTTAAATTGTGCTTAGATCTAATTCTG
ATGTACATAATAGTAGTTTGTGTATGTGTAATGTGTTTGTTCCCTCTGGGAAATGTCAAA
TTTAAGAGTAAGAGAGAAGTTTTAAATACAGTCAATTAGGATTTTCTTCCTAGCTCTGAA
TTTCTGAAGTAAGCCTAAGTATTACTGTATGGTTTATGTAAAGCAGGTTTTTCAAATGTG
TAGCTCTAGTCTGTAATTTTGGAATGCTTTATAATCACCAGAAGCCATTATTTGCATTAC
ATATGATCAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCTTTGAATGTCTCTTTGTTTAAAAACAACATAACTTTAGAAAACAAAGCATTAAAA
AAAAAGTCCATCAGTATTATGGGGAGTGTGTAAATAAGTAAATATAATATTTCATGCTTT
ATTTTTCAAAGAAAAGGTTATGCTGTTACAAGTATAGTTTATGCATATAGGTAATACTTC
TGAATTAAATTAATATTTGACTGATTGTAGTAACTGTGAAAAATAAAAAATGGTGTTACG
TTTGCCTGTGAGCCCTTGAACTGTTTTCTCTGCTACGTAATTGGGGAAAAAAAAGTCTAA
CACTAACATATAAACCTGCTTTCCTTGTAAATTATTTTACCATTTTTGCTAAACTTTTAA
AGTCACATTCCTAGTATATTTCTAAGACACAGTTTTAAATTGTGCTTAGATCTAATTCTG
ATGTACATAATAGTAGTTTGTGTATGTGTAATGTGTTTGTTCCCTCTGGGAAATGTCAAA
TTTAAGAGTAAGAGAGAAGTTTTAAATACAGTCAATTAGGATTTTCTTCCTAGCTCTGAA
TTTCTGAAGTAAGCCTAAGTATTACTGTATGGTTTATGTAAAGCAGGTTTTTCAAATGTG
TAGCTCTAGTCTGTAATTTTGGAATGCTTTATAATCACCAGAAGCCATTATTTGCATTAC
ATATGATCAGTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-461, gnl|bosTau2|chr20 (8843796-8844232)
               

               
               1-461, gnl|Hg17|chr5 (64922015-64921562)
               

               
               1-461, gnl|Mm7|chr13 (101340330-101340778)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-461, gnl|bosTau2|chr20 (8843796-8844232)
               

               
               1-461, gnl|Hg17|chr5 (64922015-64921562)
               

               
               1-461, gnl|Mm7|chr13 (101340330-101340778)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               ret (0.3862)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)

	1-461, gnl\|bosTau2\|chr20 (8843796-8844232)
	1-461, gnl\|Hg17\|chr5 (64922015-64921562)
	1-461, gnl\|Mm7\|chr13 (101340330-101340778)

	ret (0.3862)
	nlu (0.191681)
	fbs (0.175346)
	bfe (0.149858)
	ova (0.129132)