Non-Coding RNA Search

Ss1.1-rret12_g9.5

Sequence:


               
               AAGTGCTTTGCTGTTAATATCTGTGAAAAATGAACTTGTTAATATCTATGAAAGAGTGAA
CTCATTTTGTTCGCTTCTCAATTTTCCCTAGTGTTGATTTCAAAGATATCCTGTTTATCA
AAAATACTGTCAGAACACTTTTTCTACTTAGTAGTTATTTAGCAGGGGAGAATAATTCTG
ATGTTCAACTGTCACTGTAATTCTATAAGACTATTATGGTGAAAAATGCAGTTCTATAAG
CTAGCTCTGTTGTCACAGTTGTATTCATAGTGAATAATTTTTCCATTTTATGTGCAATCC
TGTTTAGAATCCCTGTTAGAATTGTCGTAACAATCCCATCCATGTCAGTAGTTCTCTGAT
GTCAAGAATGGATGGAATATTTCTGAATTAATGGTTCTGAACACTATTATACTAGGTGTC
ATAAACTCTTTTATGAATGGTAATATTATGTAAATTAAGGTCTGGCCTTCAAACTATATT
GCAGCTCTCAGCAGTGTGTTTGAAGTCCTCTTTTGTTAAGGATTCTGTTATGTTTAAATC
GTATTTTTGGGTTTTTGAAAAAGGATGTGAAGACTTAGTAATTATTCTTCGGGAGTAGTC
TGAAAATTGTAGTGAAAGAATTAATGGTTTTATATTTTACAACACAGTCATGTAAGCTAT
TGCTGGTTGAATTGTTGCTAGAATTAGAAAGTATAATTTAGAATATGTGTTTCTGTGATT
CTTTTTGCCTCTTAATATTTTCTCTTTTGCATTTATAGATCTAGGATTGAGGCATTTTCT
TTCTGATGGCTTGATCCTGTCTTAAAGAGCTGTTCTGAAACTCCCAGTTACCTGGCTGCC
TCAGGATCAGCTCACAGTGTCTTGCTTTTAGGTTAGATACAAACAAAATTAATCATACTT
GGTGTAAATACAGCAAAAAATGGTGGATGTTAGAATGGAGAACACTAGAACTCAAAATTG
AGGTATATCCCAATTAAAAGCTTTGGAATTAGCTTTGCATTCGTTTGTAACTTTAAACAG
ATGTGCATATTGGTTAACGTGTAAATATATTGCATTTTTAAAAGATTAATGTTTCCTTTT
AAGTGCTGATTTCTTTGTATCCTAGTCTCTGCATTCAGTATTCAGTAATACTACCAATAC
AATAAATGTATTTATAATCTCATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGCTTTGCTGTTAATATCTGTGAAAAATGAACTTGTTAATATCTATGAAAGAGTGAA
CTCATTTTGTTCGCTTCTCAATTTTCCCTAGTGTTGATTTCAAAGATATCCTGTTTATCA
AAAATACTGTCAGAACACTTTTTCTACTTAGTAGTTATTTAGCAGGGGAGAATAATTCTG
ATGTTCAACTGTCACTGTAATTCTATAAGACTATTATGGTGAAAAATGCAGTTCTATAAG
CTAGCTCTGTTGTCACAGTTGTATTCATAGTGAATAATTTTTCCATTTTATGTGCAATCC
TGTTTAGAATCCCTGTTAGAATTGTCGTAACAATCCCATCCATGTCAGTAGTTCTCTGAT
GTCAAGAATGGATGGAATATTTCTGAATTAATGGTTCTGAACACTATTATACTAGGTGTC
ATAAACTCTTTTATGAATGGTAATATTATGTAAATTAAGGTCTGGCCTTCAAACTATATT
GCAGCTCTCAGCAGTGTGTTTGAAGTCCTCTTTTGTTAAGGATTCTGTTATGTTTAAATC
GTATTTTTGGGTTTTTGAAAAAGGATGTGAAGACTTAGTAATTATTCTTCGGGAGTAGTC
TGAAAATTGTAGTGAAAGAATTAATGGTTTTATATTTTACAACACAGTCATGTAAGCTAT
TGCTGGTTGAATTGTTGCTAGAATTAGAAAGTATAATTTAGAATATGTGTTTCTGTGATT
CTTTTTGCCTCTTAATATTTTCTCTTTTGCATTTATAGATCTAGGATTGAGGCATTTTCT
TTCTGATGGCTTGATCCTGTCTTAAAGAGCTGTTCTGAAACTCCCAGTTACCTGGCTGCC
TCAGGATCAGCTCACAGTGTCTTGCTTTTAGGTTAGATACAAACAAAATTAATCATACTT
GGTGTAAATACAGCAAAAAATGGTGGATGTTAGAATGGAGAACACTAGAACTCAAAATTG
AGGTATATCCCAATTAAAAGCTTTGGAATTAGCTTTGCATTCGTTTGTAACTTTAAACAG
ATGTGCATATTGGTTAACGTGTAAATATATTGCATTTTTAAAAGATTAATGTTTCCTTTT
AAGTGCTGATTTCTTTGTATCCTAGTCTCTGCATTCAGTATTCAGTAATACTACCAATAC
AATAAATGTATTTATAATCTCATAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               438-556, + strand, RNAz p=0.980504

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-556, + strand, RNAz p=0.980504

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_198401, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_198401, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-1165, gnl|bosTau2|chr14 (38385065-38383953)
               

               
               8-1165, gnl|Hg17|chr8 (101603293-101602176)
               

               
               8-1165, gnl|Mm7|chr15 (36587964-36587001)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1165, gnl|bosTau2|chr14 (38385065-38383953)
               

               
               8-1165, gnl|Hg17|chr8 (101603293-101602176)
               

               
               8-1165, gnl|Mm7|chr15 (36587964-36587001)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               kid (0.389206)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	8-1165, gnl\|bosTau2\|chr14 (38385065-38383953)
	8-1165, gnl\|Hg17\|chr8 (101603293-101602176)
	8-1165, gnl\|Mm7\|chr15 (36587964-36587001)

	kid (0.389206)
	sag (0.36543)
	gul (0.355177)
	fco (0.314416)
	isp (0.300752)
	lyg (0.266205)
	ova (0.258264)
	ret (0.257467)
	tra (0.246184)
	pan (0.23596)
	mgp (0.230681)
	spc (0.226732)
	fcc (0.197785)
	cmu (0.186393)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	tbr (0.154178)
	cag (0.151194)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	ssp (0.13552)
	ste (0.135208)
	cbr (0.127975)
	ecc (0.115035)
	jej (0.0989218)
	ldo (0.0970026)