Non-Coding RNA Search

Ss1.1-rret12_i15.5

Sequence:


               
               CAGAGCCATAGTAATACGAGATCTGAGCCTCGTCTGCGACCTACACCACAGCTCATGGCA
ACACCTGATTCTTAACCCATTGAGAGAGGCCAGGGATCGAACCTGTATCCTCATGGATAC
TAGTCAAGTTCTTAATCTGCTGAGATGCAATGATAACTCCCCATACCTTAATTTTAAAAT
ACTTTATTGTTGAAAGATGCTGAACATCCTCTGAACCTTTAATGAGTAGTAACATCAGAG
ATCACTGCTCCCAGATCACCTTAACAAGTATAATAATAATAATGAAAAAGTTTGAAATAT
TGTGAGAATTACCAACATGTGACACAGAGATACAAAGTGAGCAAATGCTTCAAAACTTCC
ATTTGAACAAAATGCAATATCTGCAAAGCACAATAAAATGAGGTATGCCTATATATGAAA
CTTCTTTGGTTTCACTTGTATAAAATATTATTTACTAGCACATGTATTTCTTGGTACTTA
TAAGTATATAATGACAATAGTGAAGCTTAATAGGGATGAGAAAGTCCCCAATATTTAACA
CTGAGTGTAGCAATATTTCTGACTATGTATTTATTTAACTGTCAGAATTGTTTTGTGATA
AATTCTTCAGAAATTAATAATTAAAAAATTGTGTCTCAACAGGGCTGGGAATTTCAACTG
TAAGTTCAGTATTAACATTTCAAGACCATTTCTAACATGTAAAACTTTTGGGCCTCCCCG
GGTAATTTTCAATGTTACTTAAAATTTTATACCAGTAAATAAACTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGCCATAGTAATACGAGATCTGAGCCTCGTCTGCGACCTACACCACAGCTCATGGCA
ACACCTGATTCTTAACCCATTGAGAGAGGCCAGGGATCGAACCTGTATCCTCATGGATAC
TAGTCAAGTTCTTAATCTGCTGAGATGCAATGATAACTCCCCATACCTTAATTTTAAAAT
ACTTTATTGTTGAAAGATGCTGAACATCCTCTGAACCTTTAATGAGTAGTAACATCAGAG
ATCACTGCTCCCAGATCACCTTAACAAGTATAATAATAATAATGAAAAAGTTTGAAATAT
TGTGAGAATTACCAACATGTGACACAGAGATACAAAGTGAGCAAATGCTTCAAAACTTCC
ATTTGAACAAAATGCAATATCTGCAAAGCACAATAAAATGAGGTATGCCTATATATGAAA
CTTCTTTGGTTTCACTTGTATAAAATATTATTTACTAGCACATGTATTTCTTGGTACTTA
TAAGTATATAATGACAATAGTGAAGCTTAATAGGGATGAGAAAGTCCCCAATATTTAACA
CTGAGTGTAGCAATATTTCTGACTATGTATTTATTTAACTGTCAGAATTGTTTTGTGATA
AATTCTTCAGAAATTAATAATTAAAAAATTGTGTCTCAACAGGGCTGGGAATTTCAACTG
TAAGTTCAGTATTAACATTTCAAGACCATTTCTAACATGTAAAACTTTTGGGCCTCCCCG
GGTAATTTTCAATGTTACTTAAAATTTTATACCAGTAAATAAACTTTC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               227-418, gnl|bosTau2|chr11 (84169993-84170186)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-418, gnl|bosTau2|chr11 (84169993-84170186)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               ret (0.7724)
               

               
               aor (0.195274)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               aor (0.195274)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	ret (0.7724)
	aor (0.195274)
	fat (0.147427)
	kid (0.129735)
	tra (0.123092)