Non-Coding RNA Search

Ss1.1-rret12_j24.5

Sequence:


               
               GCCTTTTTAAAATTACTGTTTATTGAGTATTTTACATATGTTATCTCATTCAGTTCTTAC
AATAAGCCTAAGAGGAAACAGAGGCTCAGAGGGGTTAAATATCATGCCCCACCGTAAGGT
AAATATCTGGCAGAAACAGGACTTGAAACTAGGTCATGTTTTATATGTGCATCTAGCACA
GTGTCTTGGCATCAGGTGTGTGTGTGGGATGTCAATAAATGCTCATCAAATGAGTAAGTG
GTTCAGTGAATAAACTGTATGCCACAAACCACAAGGAAGCATTTTGGCCACCAGCTGAAA
ACAAGTCCTTTCAGTTACTCTCACAGCTCTGAGCCTGCTGCAGACTTTCATTCAAACCAG
ACCTTAATACCTAGGAGAAGGCTATATCGCAAAATCAGATTACGGGAAACAATGCATCTG
ACTATCTCGCTTAAGGCCATTTACTGAGTCCAATAATGTGGTTCTCATCATAATCAGCAT
TTAAAGCTTTAATTTGAAGTATTACGCTGTGTCAGAAACAGACAAACATGAAGAATAGAT
GAAATAAGAGAAGCCTTCCTTTCATCATATGAATGGAACTTTATCATGCCCTGTGTTCAG
ATGAGAAGTTTTCTTTGGCTAACTAAGACCTAACTAGGGAACTCGGAACAGAACAACACA
CCCCTTTATGTTATGTTAAGTATAACCTTCATGGATTACTAACTTTGGATACCAATATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTTTTAAAATTACTGTTTATTGAGTATTTTACATATGTTATCTCATTCAGTTCTTAC
AATAAGCCTAAGAGGAAACAGAGGCTCAGAGGGGTTAAATATCATGCCCCACCGTAAGGT
AAATATCTGGCAGAAACAGGACTTGAAACTAGGTCATGTTTTATATGTGCATCTAGCACA
GTGTCTTGGCATCAGGTGTGTGTGTGGGATGTCAATAAATGCTCATCAAATGAGTAAGTG
GTTCAGTGAATAAACTGTATGCCACAAACCACAAGGAAGCATTTTGGCCACCAGCTGAAA
ACAAGTCCTTTCAGTTACTCTCACAGCTCTGAGCCTGCTGCAGACTTTCATTCAAACCAG
ACCTTAATACCTAGGAGAAGGCTATATCGCAAAATCAGATTACGGGAAACAATGCATCTG
ACTATCTCGCTTAAGGCCATTTACTGAGTCCAATAATGTGGTTCTCATCATAATCAGCAT
TTAAAGCTTTAATTTGAAGTATTACGCTGTGTCAGAAACAGACAAACATGAAGAATAGAT
GAAATAAGAGAAGCCTTCCTTTCATCATATGAATGGAACTTTATCATGCCCTGTGTTCAG
ATGAGAAGTTTTCTTTGGCTAACTAAGACCTAACTAGGGAACTCGGAACAGAACAACACA
CCCCTTTATGTTATGTTAAGTATAACCTTCATGGATTACTAACTTTGGATACCAATATCT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-611, gnl|bosTau2|chr6 (42146802-42147406)
               

               
               3-611, gnl|Hg17|chr5 (127379381-127378790)
               

               
               3-611, gnl|Mm7|chr18 (58197214-58196638)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-611, gnl|bosTau2|chr6 (42146802-42147406)
               

               
               3-611, gnl|Hg17|chr5 (127379381-127378790)
               

               
               3-611, gnl|Mm7|chr18 (58197214-58196638)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	3-611, gnl\|bosTau2\|chr6 (42146802-42147406)
	3-611, gnl\|Hg17\|chr5 (127379381-127378790)
	3-611, gnl\|Mm7\|chr18 (58197214-58196638)