Non-Coding RNA Search

Ss1.1-rret13_f22.5

Sequence:


               
               GGACAATAGAACAGAGATATTTTGTTTGGGGCATAGAAAGTCACAGGTAGAAGTACAACA
TATTTTTTATATATCAGTTATTCTTAAAGATTTGGGATTAAAATTCTTAATCTTTGCATT
TTTAAAATACTTTCTCTCATGTATATGTTATGAAAAACATGAAGTTTAAAAGAATACTGT
ACTTATGATGGACTCTTTTGGACTATGACTGCAGCTGTTCGTTTCCACCTTGGAATATGC
ATTCACTCTTTTGTACCATAGGAGGACTTAAGTAGATTAATTTGTAAGCATTGCCAGAAC
AATTGAAAGGAAAAGGTAAAGAGGTAAAACTGTGTGATATAAATCTGGGAGACATGGTAA
CTAAAAATGTATCCTCTCTTTTGGGGAGGAATGAGCACCATAAAGTATTCCTTGAAACTG
TCATTTTATTGCTTTGATCTCATGTTCATGAAGTTACTCACTAATCCTGAAACACAAGCA
TATTAGTTTCTTTTTTTAAATTATTTTTTGAGATACAACTTATGTACAATAAAAGCACCC
ATGTGTGCTGCTTTCTTGAAATAAATATTCAATCACTAAAGTATTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAATAGAACAGAGATATTTTGTTTGGGGCATAGAAAGTCACAGGTAGAAGTACAACA
TATTTTTTATATATCAGTTATTCTTAAAGATTTGGGATTAAAATTCTTAATCTTTGCATT
TTTAAAATACTTTCTCTCATGTATATGTTATGAAAAACATGAAGTTTAAAAGAATACTGT
ACTTATGATGGACTCTTTTGGACTATGACTGCAGCTGTTCGTTTCCACCTTGGAATATGC
ATTCACTCTTTTGTACCATAGGAGGACTTAAGTAGATTAATTTGTAAGCATTGCCAGAAC
AATTGAAAGGAAAAGGTAAAGAGGTAAAACTGTGTGATATAAATCTGGGAGACATGGTAA
CTAAAAATGTATCCTCTCTTTTGGGGAGGAATGAGCACCATAAAGTATTCCTTGAAACTG
TCATTTTATTGCTTTGATCTCATGTTCATGAAGTTACTCACTAATCCTGAAACACAAGCA
TATTAGTTTCTTTTTTTAAATTATTTTTTGAGATACAACTTATGTACAATAAAAGCACCC
ATGTGTGCTGCTTTCTTGAAATAAATATTCAATCACTAAAGTATTCAG

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               90-587, gnl|bosTau2|chr8 (10531890-10531376)
               

               
               90-587, gnl|canFam2|chr11 (48272990-48273429)
               

               
               90-587, gnl|dasNov1|scaffold_219171 (536-1018)
               

               
               90-587, gnl|hg17|chr9 (27053224-27053684)
               

               
               90-587, gnl|Hg17|chr9 (27053275-27053800)
               

               
               90-587, gnl|loxAfr1|scaffold_37314 (13603-14124)
               

               
               90-587, gnl|panTro1|chr11 (27583447-27583908)
               

               
               90-587, gnl|rheMac2|chr15 (50030076-50029616)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-587, gnl|bosTau2|chr8 (10531890-10531376)
               

               
               90-587, gnl|canFam2|chr11 (48272990-48273429)
               

               
               90-587, gnl|dasNov1|scaffold_219171 (536-1018)
               

               
               90-587, gnl|hg17|chr9 (27053224-27053684)
               

               
               90-587, gnl|Hg17|chr9 (27053275-27053800)
               

               
               90-587, gnl|loxAfr1|scaffold_37314 (13603-14124)
               

               
               90-587, gnl|panTro1|chr11 (27583447-27583908)
               

               
               90-587, gnl|rheMac2|chr15 (50030076-50029616)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ret (0.257467)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)

	90-587, gnl\|bosTau2\|chr8 (10531890-10531376)
	90-587, gnl\|canFam2\|chr11 (48272990-48273429)
	90-587, gnl\|dasNov1\|scaffold_219171 (536-1018)
	90-587, gnl\|hg17\|chr9 (27053224-27053684)
	90-587, gnl\|Hg17\|chr9 (27053275-27053800)
	90-587, gnl\|loxAfr1\|scaffold_37314 (13603-14124)
	90-587, gnl\|panTro1\|chr11 (27583447-27583908)
	90-587, gnl\|rheMac2\|chr15 (50030076-50029616)