Non-Coding RNA Search

Ss1.1-rret13_p6.5

Sequence:


               
               ATTTTTAATACAATAAAAAGGTTATATATGCAGTTCCTATTTTTAGCTTGCTTAAAAGGG
AGCACTATTTTTATTTAAAACACTGTTAGGAAATGCTTTGTAGAAACTTGGTTTTCTAAG
CATAGTTCTTCCATAACCATCTTTTGTTATTTGAGCACAAGAGATCCTATTTCTTGTTGT
ATGTATTTCTTGTTTTTCCCTGTATGCAGTCTTTGAAGGATTATAACACTTAAAATTGGA
GAGACTTGTGACAAGCTTTCGAATCATACATTTTTTGCAAGTTTTTAAAAAGCCTACAAT
TTACATAAGTGATAGAATCAGCCATTGCTCTGCTCCTTGCATAGAGTCACCTCTTAAGTA
GGTTAAATAGTTTTAAAATACATACTTTCCAGACCTTTGAGAATGCTTTAGTGTTTGGTT
CGCTATAAAAGGAAATTTTAGCAAGGATTAAAGAAAAAAGCTATCAGCTATATGCTAAGA
GAGAATCTTACTAACACGTTGTAAATATTACAATTCATGAAATGTTATTTTAAGTCTGTA
ACTTAAGTTTTTTCCCCCCTTTATTAGTTATACATATTGGTTTAAAATTTGTTTTTTGGT
TTAAACAAGTAAAATTGTGCCCATTTTATGGTTTCCATGCTTTTGTAATCCTAAAAATAT
TAATGTCTAGTCGTTCTATATTATAACCACATTTGCGCTCTATGCAAGCCCTTGGAACAG
AACATACTCATCTTCATGTAGGACCTATGAAAATTGTCTATTTTTATCTATATATTTAAA
GTTTTCTAAAAATGATAAAAGGTTATTACGAATTTTGTTGTACAAAATCTGTACAAAAAT
CTGTTTTTACATCATAATGCAAGAATTGGAAATTTTTCTATGGTAGCCTAGTTCTTTGAG
CCTGGTTTCAATGTGAGAACCACGTTTACTGTTATTGTATTTAATTTTCTTTTTCTTTTC
AACAATCTCCTAATAAAACTGTCTGAAATCTCCCTGCGACTTTATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTAATACAATAAAAAGGTTATATATGCAGTTCCTATTTTTAGCTTGCTTAAAAGGG
AGCACTATTTTTATTTAAAACACTGTTAGGAAATGCTTTGTAGAAACTTGGTTTTCTAAG
CATAGTTCTTCCATAACCATCTTTTGTTATTTGAGCACAAGAGATCCTATTTCTTGTTGT
ATGTATTTCTTGTTTTTCCCTGTATGCAGTCTTTGAAGGATTATAACACTTAAAATTGGA
GAGACTTGTGACAAGCTTTCGAATCATACATTTTTTGCAAGTTTTTAAAAAGCCTACAAT
TTACATAAGTGATAGAATCAGCCATTGCTCTGCTCCTTGCATAGAGTCACCTCTTAAGTA
GGTTAAATAGTTTTAAAATACATACTTTCCAGACCTTTGAGAATGCTTTAGTGTTTGGTT
CGCTATAAAAGGAAATTTTAGCAAGGATTAAAGAAAAAAGCTATCAGCTATATGCTAAGA
GAGAATCTTACTAACACGTTGTAAATATTACAATTCATGAAATGTTATTTTAAGTCTGTA
ACTTAAGTTTTTTCCCCCCTTTATTAGTTATACATATTGGTTTAAAATTTGTTTTTTGGT
TTAAACAAGTAAAATTGTGCCCATTTTATGGTTTCCATGCTTTTGTAATCCTAAAAATAT
TAATGTCTAGTCGTTCTATATTATAACCACATTTGCGCTCTATGCAAGCCCTTGGAACAG
AACATACTCATCTTCATGTAGGACCTATGAAAATTGTCTATTTTTATCTATATATTTAAA
GTTTTCTAAAAATGATAAAAGGTTATTACGAATTTTGTTGTACAAAATCTGTACAAAAAT
CTGTTTTTACATCATAATGCAAGAATTGGAAATTTTTCTATGGTAGCCTAGTTCTTTGAG
CCTGGTTTCAATGTGAGAACCACGTTTACTGTTATTGTATTTAATTTTCTTTTTCTTTTC
AACAATCTCCTAATAAAACTGTCTGAAATCTCCCTGCGACTTTATTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1008, gnl|bosTau2|chr12 (22757413-22756410)
               

               
               1-1008, gnl|Hg17|chr13 (70911089-70910083)
               

               
               1-1008, gnl|Mm7|chr14 (92139672-92138651)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr12 (22757413-22756410)
               

               
               1-1008, gnl|Hg17|chr13 (70911089-70910083)
               

               
               1-1008, gnl|Mm7|chr14 (92139672-92138651)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               ret (0.901133)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.901133)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               kid (0.129735)

	1-1008, gnl\|bosTau2\|chr12 (22757413-22756410)
	1-1008, gnl\|Hg17\|chr13 (70911089-70910083)
	1-1008, gnl\|Mm7\|chr14 (92139672-92138651)