Non-Coding RNA Search

Ss1.1-rret14_e15.5

Sequence:


               
               TGAAGTGCTGGCACCAAGAGAGCATCACAGAAACACTGTACTAAATGTGAACAGGGAACT
AAACTGGAGCTGAAATTATACTGACAATAGTAGGGCATTTTAAAAATCATGGCATTTTAA
TTTGCATTACAGTGAAGTTGTGACACCTCTGGGGAGGTGGGGGGTTAGCTTCTAACGTCA
GCACATAAGATAAAATGGGGTATCCAGATGGTCCTTGAAAGCCCTTTAGGATGGCGCCAT
ATTGGGAATATCCATCACAGCCAGTTTTTTCCTCAAGTGTTTGAAGAGATACAACTCTTG
ATTCAGTTAAAACCAGTTTTGAAGGTGATGGTATTTGTTTAGGGGCTGTTTTGTATTAAA
AACATAGCTTTAAACACTAGAATTAGACGTAACCTGCCAGATGCCCTCTAAGAGACGAAT
GTGAACTGACAGTGACTGAAGGAGCCCCAGACTGACAACACCCATCTCAGCTTACTCGAG
GGCATCTGGTCCTTCAATAGGTGGTTTTATTGCCAGGTTAATTGTTATTTTCCTTACTCC
TTATCATCTCCTTTTCACTGACCTCATATATTGAAATAATGTAAATTAAATGTGTTTATG
ATGTAACCCCACTGTACGTCTTAGAGGCATTCATATTTTGAGTGGTAAAAGATAAAAACA
TATATGCAGCCTATATGTATGTGCTGTATTTGGGCATTTCCTTGAAAATGAATTAACAGC
TAGCCTATTTATGGTCATTAGCTTAATAAGCTTCTGTGTGGGAGAAAAATATTTAGATTC
AAAACTAATAACTAAATCATGGTTTTTGATTAGGATCTAAATAAACAGGTTTAAAGCTTG
CTGCAAACTCTTAGATATTTGTGAATAGATGTGTTACTACATGCTAGAAACAAGCAAGAA
CTAAATAATCAAGTGACATCAATCAGAAATGACTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGTGCTGGCACCAAGAGAGCATCACAGAAACACTGTACTAAATGTGAACAGGGAACT
AAACTGGAGCTGAAATTATACTGACAATAGTAGGGCATTTTAAAAATCATGGCATTTTAA
TTTGCATTACAGTGAAGTTGTGACACCTCTGGGGAGGTGGGGGGTTAGCTTCTAACGTCA
GCACATAAGATAAAATGGGGTATCCAGATGGTCCTTGAAAGCCCTTTAGGATGGCGCCAT
ATTGGGAATATCCATCACAGCCAGTTTTTTCCTCAAGTGTTTGAAGAGATACAACTCTTG
ATTCAGTTAAAACCAGTTTTGAAGGTGATGGTATTTGTTTAGGGGCTGTTTTGTATTAAA
AACATAGCTTTAAACACTAGAATTAGACGTAACCTGCCAGATGCCCTCTAAGAGACGAAT
GTGAACTGACAGTGACTGAAGGAGCCCCAGACTGACAACACCCATCTCAGCTTACTCGAG
GGCATCTGGTCCTTCAATAGGTGGTTTTATTGCCAGGTTAATTGTTATTTTCCTTACTCC
TTATCATCTCCTTTTCACTGACCTCATATATTGAAATAATGTAAATTAAATGTGTTTATG
ATGTAACCCCACTGTACGTCTTAGAGGCATTCATATTTTGAGTGGTAAAAGATAAAAACA
TATATGCAGCCTATATGTATGTGCTGTATTTGGGCATTTCCTTGAAAATGAATTAACAGC
TAGCCTATTTATGGTCATTAGCTTAATAAGCTTCTGTGTGGGAGAAAAATATTTAGATTC
AAAACTAATAACTAAATCATGGTTTTTGATTAGGATCTAAATAAACAGGTTTAAAGCTTG
CTGCAAACTCTTAGATATTTGTGAATAGATGTGTTACTACATGCTAGAAACAAGCAAGAA
CTAAATAATCAAGTGACATCAATCAGAAATGACTGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chr16 (7507407-7506472)
               

               
               1-936, gnl|Hg17|chr5 (122371804-122372719)
               

               
               1-936, gnl|Mm7|chr18 (53770804-53771610)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr16 (7507407-7506472)
               

               
               1-936, gnl|Hg17|chr5 (122371804-122372719)
               

               
               1-936, gnl|Mm7|chr18 (53770804-53771610)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               hea (0.204499)
               

               
               col (0.195008)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

	1-936, gnl\|bosTau2\|chr16 (7507407-7506472)
	1-936, gnl\|Hg17\|chr5 (122371804-122372719)
	1-936, gnl\|Mm7\|chr18 (53770804-53771610)

	hea (0.204499)
	col (0.195008)
	lin (0.145603)
	hyp (0.142837)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)