Ss1.1-rret14_e21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTATGAAATAGTCTTTAATATCTCAGCAATAATCCTGTGCTACATTGTTTTAAGGAACT AACTCTATACACTTCAAAACTTGGGCCAGTTAATAAAGATGCAAAAAAAAAAAACTGTTT TGTAGAGATGTAAAAACAAGTCTGTTGTATAATGGATCTCATATTTTTCTTTAAATTAAA AAAAAAAGGGGGCAAATGAACTCTTCTCCTTGTAAAGCTAAATTCCCCATTCTAGTGAAT AAAGGAAGACAGAAGAAAAGGTTTTAAAGAGTGTGAACGGAAAGGTAGAATTGCTTTGAA GGGATAAATGAGACATTCAAACAGGGTCAATCCATTTGAAGAAAAAGTAGAACAAAATAA TCACCATTATTTCCTCTTTGGTTTAATGTTTGGGTACTGATTTTATCCCCATGGAAGTAG AAGGTAAGGAGCTATTTAGGAAGATATTAGCATCTATCCTACTTACATTATTGTTTAAGT GTTTACACAGTTTTGTTCAATTACAAACATTTGGCCTTTTACTATGTTATTTTTATTTTG TATGAAAACATTATTCTCCTTATTTATTTTGGTTACATTTATTACTTATGTTATTTGGTT ATGCATTTACAACTCCATTTTTAAATAAAGTGTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTATGAAATAGTCTTTAATATCTCAGCAATAATCCTGTGCTACATTGTTTTAAGGAACT AACTCTATACACTTCAAAACTTGGGCCAGTTAATAAAGATGCAAAAAAAAAAAACTGTTT TGTAGAGATGTAAAAACAAGTCTGTTGTATAATGGATCTCATATTTTTCTTTAAATTAAA AAAAAAAGGGGGCAAATGAACTCTTCTCCTTGTAAAGCTAAATTCCCCATTCTAGTGAAT AAAGGAAGACAGAAGAAAAGGTTTTAAAGAGTGTGAACGGAAAGGTAGAATTGCTTTGAA GGGATAAATGAGACATTCAAACAGGGTCAATCCATTTGAAGAAAAAGTAGAACAAAATAA TCACCATTATTTCCTCTTTGGTTTAATGTTTGGGTACTGATTTTATCCCCATGGAAGTAG AAGGTAAGGAGCTATTTAGGAAGATATTAGCATCTATCCTACTTACATTATTGTTTAAGT GTTTACACAGTTTTGTTCAATTACAAACATTTGGCCTTTTACTATGTTATTTTTATTTTG TATGAAAACATTATTCTCCTTATTTATTTTGGTTACATTTATTACTTATGTTATTTGGTT ATGCATTTACAACTCCATTTTTAAATAAAGTGTTTC |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 81-636, gnl|bosTau2|chr16 (23566598-23566039) | |
| 81-636, gnl|canFam2|chr7 (37235648-37236496) | |
| 81-636, gnl|canFam2|chr7 (37236496-37235649) | |
| 81-636, gnl|dasNov1|scaffold_40623 (6171-5380) | |
| 81-636, gnl|dasNov1|scaffold_40623 (5380-6171) | |
| 81-636, gnl|echTel1|scaffold_306688 (53113-52341) | |
| 81-636, gnl|echTel1|scaffold_306688 (52341-53113) | |
| 81-636, gnl|galGal2|chr3 (31595341-31594514) | |
| 81-636, gnl|galGal2|chr3 (31594514-31595341) | |
| 81-636, gnl|hg17|chr1 (239613750-239614546) | |
| 81-636, gnl|Hg17|chr1 (239614318-239613781) | |
| 81-636, gnl|hg17|chr4 (119834106-119834900) | |
| 81-636, gnl|loxAfr1|scaffold_11171 (6333-7143) | |
| 81-636, gnl|loxAfr1|scaffold_11171 (7143-6333) | |
| 81-636, gnl|mm7|chr1 (176699924-176700696) | |
| 81-636, gnl|mm7|chr1 (176700696-176699924) | |
| 81-636, gnl|Mm7|chr1 (176700472-176699955) | |
| 81-636, gnl|monDom2|scaffold_13 (40784716-40783921) | |
| 81-636, gnl|monDom2|scaffold_13 (40783921-40784716) | |
| 81-636, gnl|panTro1|chr1 (223604496-223605292) | |
| 81-636, gnl|panTro1|chr1 (223605292-223604496) | |
| 81-636, gnl|rheMac2|chr1 (213983202-213982410) | |
| 81-636, gnl|rheMac2|chr1 (213982410-213983202) | |
| 81-636, gnl|rn3|chr13 (92691210-92691970) | |
| 81-636, gnl|rn3|chr13 (92691970-92691210) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-636, gnl|bosTau2|chr16 (23566598-23566039) | |
| 81-636, gnl|canFam2|chr7 (37235648-37236496) | |
| 81-636, gnl|canFam2|chr7 (37236496-37235649) | |
| 81-636, gnl|dasNov1|scaffold_40623 (6171-5380) | |
| 81-636, gnl|dasNov1|scaffold_40623 (5380-6171) | |
| 81-636, gnl|echTel1|scaffold_306688 (53113-52341) | |
| 81-636, gnl|echTel1|scaffold_306688 (52341-53113) | |
| 81-636, gnl|galGal2|chr3 (31595341-31594514) | |
| 81-636, gnl|galGal2|chr3 (31594514-31595341) | |
| 81-636, gnl|hg17|chr1 (239613750-239614546) | |
| 81-636, gnl|Hg17|chr1 (239614318-239613781) | |
| 81-636, gnl|hg17|chr4 (119834106-119834900) | |
| 81-636, gnl|loxAfr1|scaffold_11171 (6333-7143) | |
| 81-636, gnl|loxAfr1|scaffold_11171 (7143-6333) | |
| 81-636, gnl|mm7|chr1 (176699924-176700696) | |
| 81-636, gnl|mm7|chr1 (176700696-176699924) | |
| 81-636, gnl|Mm7|chr1 (176700472-176699955) | |
| 81-636, gnl|monDom2|scaffold_13 (40784716-40783921) | |
| 81-636, gnl|monDom2|scaffold_13 (40783921-40784716) | |
| 81-636, gnl|panTro1|chr1 (223604496-223605292) | |
| 81-636, gnl|panTro1|chr1 (223605292-223604496) | |
| 81-636, gnl|rheMac2|chr1 (213983202-213982410) | |
| 81-636, gnl|rheMac2|chr1 (213982410-213983202) | |
| 81-636, gnl|rn3|chr13 (92691210-92691970) | |
| 81-636, gnl|rn3|chr13 (92691970-92691210) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| eye (0.341006) | |
| fco (0.314416) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ecc (0.115035) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| eye (0.341006) | |
| fco (0.314416) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ecc (0.115035) |