Non-Coding RNA Search

Ss1.1-rret14_i12.5

Sequence:


               
               CTAAAGGACCTGCTGGAAAAAGCAAACAAGACTGTTGATGATACAAAATTAGCTGAGTAT
ACAGATCTAATGCTAAAATTGTTTGATTCGAATAATGATGGGAAGCTGGAATTAACTGAG
ATGGCCAGGTTACTACCAGTGCAAGAGAATTTTCTTCTTAAATTTCAGGGAGTCAAAATG
TGTGGGAAAGAGTTCAATAAAGCTTTTGAATTATACGATCAGGATGGCAATGGATACATA
GATGAAAATGAACTGGATGCTTTACTGAAGGATCTGTGTGAGAAGAATAAACAGGATTTG
GATATTAATAATATTCCAACATACAAGAAAAGTATAATGGCTTTATCAGATGGAGGGAAG
CTGTACCGAACAGATCTTGCTCTTATTCTCTCTGCTGGGGACAACTAAATTTTATGACCA
CAACCACTTCTAGTGATACACTGTATCTAAAAAAATAACTGTGCACTGTAACGGAGTAGG
CTGTATTTTCTTTTGTATCTGTAAATTTAACTGCCTATAGATAATAATCCAAGATATGTG
GCGCATTCTTTTCAGCTTGTTTCTATACTCTTTGTAATGTACAGTTTTTGTAACCATATG
ACAGAAAAGAAGAATGTCTACTCTTAGGCCAGTCGATATACCAATTTAAAAAAATAACCT
AACATATTCTTGCTTCCATAAATATAGTTGGACAAGATTTCCCTAGAAATTCCACCAGAA
TTAATCTCTAAAATTAATCTCTAAAGTAGTCTCTGATATATAAATGCATATTTTTCACTG
AATAGAAGAATTATACATAAGAAGCCAAACATTCTTATCTCAGACAACAATCGTAGATCT
GCCCCTCAAAATAGTTCTAAGCTGTATTTCCAATTAGAAGAAAGTGCTTTTGCATCTGAA
ATACCAAAATATCAATCAATAGTTAGTTAATTGTGGCTCTATGAGGTTAACAGTCTCACT
AGATAAGATTTAGTTAATTAATCAACAATACATCTACCGCTTGAATTCATACCAATCTAT
TGATTCAAGTTGATTTGATAAGGAAAGGCTGCATAGAGCATTTGTATTTCCAACGAGTCT
GCTGTCAAAGAGTATGATCATAATCCATTTTCTAAACGTTTTCTTGTGTTGCAGATTATA
ATTATTCTAATAAACTGCTGCTTTTATGTCATATTCTATGTACTGATTAAATTATATAGC
AATATCCTGGTGTCTAGTTTGTATACTTCCTGGATTTTCATTCTATGCAGAACTGTTCAT
TTCCACCAAGGGTAACTGCTGCCTCTGAAAATATTTTTTTCTAGCTACAACAAGTCTATT
TTTTACTACCTAATTAAGTTTTAATGTAAAATTCATAGCACCCTGATTGTTGAATGTTGT
ATCATCAATAATTTTGTGTATTATGTGAATCTTATATTTCATATTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAAGGACCTGCTGGAAAAAGCAAACAAGACTGTTGATGATACAAAATTAGCTGAGTAT
ACAGATCTAATGCTAAAATTGTTTGATTCGAATAATGATGGGAAGCTGGAATTAACTGAG
ATGGCCAGGTTACTACCAGTGCAAGAGAATTTTCTTCTTAAATTTCAGGGAGTCAAAATG
TGTGGGAAAGAGTTCAATAAAGCTTTTGAATTATACGATCAGGATGGCAATGGATACATA
GATGAAAATGAACTGGATGCTTTACTGAAGGATCTGTGTGAGAAGAATAAACAGGATTTG
GATATTAATAATATTCCAACATACAAGAAAAGTATAATGGCTTTATCAGATGGAGGGAAG
CTGTACCGAACAGATCTTGCTCTTATTCTCTCTGCTGGGGACAACTAAATTTTATGACCA
CAACCACTTCTAGTGATACACTGTATCTAAAAAAATAACTGTGCACTGTAACGGAGTAGG
CTGTATTTTCTTTTGTATCTGTAAATTTAACTGCCTATAGATAATAATCCAAGATATGTG
GCGCATTCTTTTCAGCTTGTTTCTATACTCTTTGTAATGTACAGTTTTTGTAACCATATG
ACAGAAAAGAAGAATGTCTACTCTTAGGCCAGTCGATATACCAATTTAAAAAAATAACCT
AACATATTCTTGCTTCCATAAATATAGTTGGACAAGATTTCCCTAGAAATTCCACCAGAA
TTAATCTCTAAAATTAATCTCTAAAGTAGTCTCTGATATATAAATGCATATTTTTCACTG
AATAGAAGAATTATACATAAGAAGCCAAACATTCTTATCTCAGACAACAATCGTAGATCT
GCCCCTCAAAATAGTTCTAAGCTGTATTTCCAATTAGAAGAAAGTGCTTTTGCATCTGAA
ATACCAAAATATCAATCAATAGTTAGTTAATTGTGGCTCTATGAGGTTAACAGTCTCACT
AGATAAGATTTAGTTAATTAATCAACAATACATCTACCGCTTGAATTCATACCAATCTAT
TGATTCAAGTTGATTTGATAAGGAAAGGCTGCATAGAGCATTTGTATTTCCAACGAGTCT
GCTGTCAAAGAGTATGATCATAATCCATTTTCTAAACGTTTTCTTGTGTTGCAGATTATA
ATTATTCTAATAAACTGCTGCTTTTATGTCATATTCTATGTACTGATTAAATTATATAGC
AATATCCTGGTGTCTAGTTTGTATACTTCCTGGATTTTCATTCTATGCAGAACTGTTCAT
TTCCACCAAGGGTAACTGCTGCCTCTGAAAATATTTTTTTCTAGCTACAACAAGTCTATT
TTTTACTACCTAATTAAGTTTTAATGTAAAATTCATAGCACCCTGATTGTTGAATGTTGT
ATCATCAATAATTTTGTGTATTATGTGAATCTTATATTTCATATTGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|575508|gb|AAA53198.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|575508|gb|AAA53198.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               293-1427, gnl|bosTau2|chr14 (45824136-45825267)
               

               
               293-1427, gnl|Hg17|chr8 (91141692-91140557)
               

               
               293-1427, gnl|Mm7|chr4 (15831795-15832927)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               293-1427, gnl|bosTau2|chr14 (45824136-45825267)
               

               
               293-1427, gnl|Hg17|chr8 (91141692-91140557)
               

               
               293-1427, gnl|Mm7|chr4 (15831795-15832927)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               kid (1.16762)
               

               
               fce (0.543183)
               

               
               ret (0.514933)
               

               
               fco (0.157208)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.16762)
               

               
               fce (0.543183)
               

               
               ret (0.514933)
               

               
               fco (0.157208)

	293-1427, gnl\|bosTau2\|chr14 (45824136-45825267)
	293-1427, gnl\|Hg17\|chr8 (91141692-91140557)
	293-1427, gnl\|Mm7\|chr4 (15831795-15832927)