Non-Coding RNA Search

Ss1.1-rret14_i22.5

Sequence:


               
               CCATCATGTACTATCTATTTTGGTATTTCACTTCTAGATCTTTATTGTCTATGAATTTTT
ACTACATCCTGGCTGAATTTATTGTGATTGACACTCTATCTTATTTTCTTTTGACGGCTA
CTGTCCTGCTCTCTAAGACAATAGTTCTTAAGTTGTTCGAGGTAGTTTTAAATACTTCTC
TCTCTACTCACATTTACACACTTTGCCATGAATTTCAGAGAATTTACAGGTACCATGAGG
CTGCCCTAGGTGGAGAATCCCTAGATGGAGGCCAGCTTCCGTAACTTCATTCTTTGGTCA
TTGTTTATTAATATTTTGGTGATACCTCTTAGACTCCTTTGTAATTAAGCCCTCTGATTA
AATACTTTCAAGTTTAGTAATTTCCAGTTTTTATAATATAACACAAATTATAAATTTTTC
TCATTGCTTAAAACATGTCAAACAATACACTTGGAAACCGTAGTATTTTAACTTAGTATC
TATAACCCATAATGTGTTGTGTAGCACTGTTTCTAATTGATAAAAGGAACTATATGAATT
TTCCTTTCATTTGTGTAGTATTTTAGGATAGATTACATTGGGCTGTTTGGTAAAGCAATA
CAGTGTTGTAATTTATTGTCAAGTGTGCTTCTCAAGTACTTGCTGAACTGATAGTCACTG
TTGGAATCATGTCTGTGAAAGGTTATATATTGCATATTTTTTACTGTTTTATTTCCCCTT
TTGTACAGAACATATTGGTTGTTTCTCCACTACTAGTATTAAGTGGGTAGATAATATACT
CCTTAAATTTAGGAGTGAAAAACATTCCTAAATTTTCAGCCTGAGTTATTTTCTGGATCT
CAGTTTTTCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCATGTACTATCTATTTTGGTATTTCACTTCTAGATCTTTATTGTCTATGAATTTTT
ACTACATCCTGGCTGAATTTATTGTGATTGACACTCTATCTTATTTTCTTTTGACGGCTA
CTGTCCTGCTCTCTAAGACAATAGTTCTTAAGTTGTTCGAGGTAGTTTTAAATACTTCTC
TCTCTACTCACATTTACACACTTTGCCATGAATTTCAGAGAATTTACAGGTACCATGAGG
CTGCCCTAGGTGGAGAATCCCTAGATGGAGGCCAGCTTCCGTAACTTCATTCTTTGGTCA
TTGTTTATTAATATTTTGGTGATACCTCTTAGACTCCTTTGTAATTAAGCCCTCTGATTA
AATACTTTCAAGTTTAGTAATTTCCAGTTTTTATAATATAACACAAATTATAAATTTTTC
TCATTGCTTAAAACATGTCAAACAATACACTTGGAAACCGTAGTATTTTAACTTAGTATC
TATAACCCATAATGTGTTGTGTAGCACTGTTTCTAATTGATAAAAGGAACTATATGAATT
TTCCTTTCATTTGTGTAGTATTTTAGGATAGATTACATTGGGCTGTTTGGTAAAGCAATA
CAGTGTTGTAATTTATTGTCAAGTGTGCTTCTCAAGTACTTGCTGAACTGATAGTCACTG
TTGGAATCATGTCTGTGAAAGGTTATATATTGCATATTTTTTACTGTTTTATTTCCCCTT
TTGTACAGAACATATTGGTTGTTTCTCCACTACTAGTATTAAGTGGGTAGATAATATACT
CCTTAAATTTAGGAGTGAAAAACATTCCTAAATTTTCAGCCTGAGTTATTTTCTGGATCT
CAGTTTTTCCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               720-852, - strand, RNAz p=0.997346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               720-852, - strand, RNAz p=0.997346

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               109-852, gnl|bosTau2|chrX (18587459-18588215)
               

               
               109-852, gnl|Hg17|chrX (110743104-110744225)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-852, gnl|bosTau2|chrX (18587459-18588215)
               

               
               109-852, gnl|Hg17|chrX (110743104-110744225)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               kid (0.389206)
               

               
               ret (0.128733)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               ret (0.128733)
               

               
               jej (0.0989218)

	109-852, gnl\|bosTau2\|chrX (18587459-18588215)
	109-852, gnl\|Hg17\|chrX (110743104-110744225)