Non-Coding RNA Search

Ss1.1-rret14_o4.5

Sequence:


               
               TGAAGTTGTGAAGCAGATGGTAGCTGCTTTTGAAAGAAGAGCATGTAAACTGTATGGTCC
AGAAACAAGTATACCTCGGGAATTAATGCTTCATGAAGTTCATCACACATAAGAGAAAAG
GAAATGGTTGCCTACTTGTAACTAGTTTATTCACTTTTAGGAAGTGCTTTCATCATTTTG
CTTTCAGAAGGCAGAAAGCATTTGTCAAACACAGCTTTGATTATAAACCTGTACTTTGCA
CTTGGAATATGGAACCACATGTACATAGAATTCAATCAAGTGTAATTCAGAATAATGTGT
ATATTAGCATATTTACAGTAATGGGATGTCATCGCTATTGTTAGAATACTGACATCACTT
TTCTGAGCAGAAATTGAAACTGTAAATTTAACCTTTTAATTATCACCTCACCTGAAAAGG
TTGGTTGAGATACTCACGCAGCATGTATTATATTAACCATGTCATGTTTAAGTTATTAAA
TTCAGATTATTTATAACTTATTATCTTAGGGCCTGCCTCATGTCTTCTAGGGTATTTGAG
TAATCATCCTATATTTAAAGTTAAAACTTTGACTTAAAAAACACTGTTAATGAAAGTTCC
CTAGCGCTTTTCTTATTTTCAAATTGGTCTTATGGGTAGTAGTAGAGAATTCCATGCTGT
TCTGAGGCTAGCTTCCAGGTAAACAGTGATTTTTTTTTTCTTTTTTTCTTTCTTTCTTGG
TGAGTGGTCCAGAGTTTTAAGCTACTTTTCTCAAAGTTTCAACCCTTTCCCAGGTACTTT
GACTACTATTTCAGTAATGTTGATTGTGTGTCAAGTTTTGTCTACAGCAGTGGGCAATAG
ATGAAGGAAGTCGGTTGATATGTCTCCAACACCATGCATTCTGATTTTCTATTTATTGTG
TATACTCACTTTCAATAATGTATTTCCAACTGATATTTTTGTAAACAAATCAGTGTAAGG
ACTGAAGTGGTAACTTAATAAAGTTAATTTGTTTATAAAAAAAAAAAATATTTTGGTTAT
TGAAGTATTCCTGTATTGTCTAAATATACATGTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGTTGTGAAGCAGATGGTAGCTGCTTTTGAAAGAAGAGCATGTAAACTGTATGGTCC
AGAAACAAGTATACCTCGGGAATTAATGCTTCATGAAGTTCATCACACATAAGAGAAAAG
GAAATGGTTGCCTACTTGTAACTAGTTTATTCACTTTTAGGAAGTGCTTTCATCATTTTG
CTTTCAGAAGGCAGAAAGCATTTGTCAAACACAGCTTTGATTATAAACCTGTACTTTGCA
CTTGGAATATGGAACCACATGTACATAGAATTCAATCAAGTGTAATTCAGAATAATGTGT
ATATTAGCATATTTACAGTAATGGGATGTCATCGCTATTGTTAGAATACTGACATCACTT
TTCTGAGCAGAAATTGAAACTGTAAATTTAACCTTTTAATTATCACCTCACCTGAAAAGG
TTGGTTGAGATACTCACGCAGCATGTATTATATTAACCATGTCATGTTTAAGTTATTAAA
TTCAGATTATTTATAACTTATTATCTTAGGGCCTGCCTCATGTCTTCTAGGGTATTTGAG
TAATCATCCTATATTTAAAGTTAAAACTTTGACTTAAAAAACACTGTTAATGAAAGTTCC
CTAGCGCTTTTCTTATTTTCAAATTGGTCTTATGGGTAGTAGTAGAGAATTCCATGCTGT
TCTGAGGCTAGCTTCCAGGTAAACAGTGATTTTTTTTTTCTTTTTTTCTTTCTTTCTTGG
TGAGTGGTCCAGAGTTTTAAGCTACTTTTCTCAAAGTTTCAACCCTTTCCCAGGTACTTT
GACTACTATTTCAGTAATGTTGATTGTGTGTCAAGTTTTGTCTACAGCAGTGGGCAATAG
ATGAAGGAAGTCGGTTGATATGTCTCCAACACCATGCATTCTGATTTTCTATTTATTGTG
TATACTCACTTTCAATAATGTATTTCCAACTGATATTTTTGTAAACAAATCAGTGTAAGG
ACTGAAGTGGTAACTTAATAAAGTTAATTTGTTTATAAAAAAAAAAAATATTTTGGTTAT
TGAAGTATTCCTGTATTGTCTAAATATACATGTACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-197, gnl|bosTau2|chr15 (5877497-5877301)
               

               
               1-197, gnl|Hg17|chr5 (82611599-82611433)
               

               
               1-197, gnl|Mm7|chr8 (79737114-79736929)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr15 (5877497-5877301)
               

               
               1-197, gnl|Hg17|chr5 (82611599-82611433)
               

               
               1-197, gnl|Mm7|chr8 (79737114-79736929)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               lyg (0.665513)
               

               
               isp (0.601504)
               

               
               aor (0.390549)
               

               
               tra (0.369276)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               fat (0.294855)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.665513)
               

               
               isp (0.601504)
               

               
               aor (0.390549)
               

               
               tra (0.369276)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               fat (0.294855)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-197, gnl\|bosTau2\|chr15 (5877497-5877301)
	1-197, gnl\|Hg17\|chr5 (82611599-82611433)
	1-197, gnl\|Mm7\|chr8 (79737114-79736929)

	lyg (0.665513)
	isp (0.601504)
	aor (0.390549)
	tra (0.369276)
	gul (0.355177)
	eye (0.341006)
	fat (0.294855)
	kid (0.259471)
	ret (0.257467)
	bla (0.248694)
	mgm (0.180343)
	fhi (0.169578)
	csp (0.161186)
	lin (0.145603)
	pty (0.142714)
	pla (0.133672)
	ute (0.132784)
	clu (0.119646)
	ebs (0.118301)
	cty (0.10408)
	jej (0.0989218)