Non-Coding RNA Search

Ss1.1-rret14_o6.5

Sequence:


               
               CATAAAGAGAAATGAAAAATTCTATACCTGTTTTCTTTGGGACTGATTCTGAAATTCCTC
ACTGTCAAGGATATGTTAATAGCAGTATGATATTTAGCAGTGATCCATTAAGGGCAATGC
ATCTAACAAGGACTCCTCTCAGCTTCAGATATGTTACTTCCATTTTGTGCTACTTGAAGT
AATTAATGAGATTTTAAGGAATCCCCAACCCTACTATCAGAAAAGGTGTTTCTTAAAAAG
AGCCTTCTCTTACGTGGTGTGTGTGAACTTTGGTCTGTGGGGTGTTAAATGGAATCTCTC
CACCTGTATATAGTATTCCATTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAA
AGTTTGGAGACTGCTGTTGACAGAAAGAAAAGAAAAGGGCATATAAGGAAACCTGCTGAA
ACAGAAGCACTACTACTATGTGTGGGAAAAAAGTGACCATATAAAGGAAGTTGTACCCTT
TAACCTTGAACACTTGGAGAAACTATGTGAAGAGGCAACCTGAAAGGAGAATATATTTGC
ATGAAGTCTCCGCTTCAGGCTAGAGGTTAGATTCCACGGACACTGGCTAGGAAGAAACAT
TTTTAAAAAAACAAAACAAGAAGAAACTTTAAAATAAGAGAAAGGAGTCATATGTGTAAT
AATATGTTTGGATAAAGAGGAAATGGACTTTAAATTTTAAAAAGCCCATTTATTTGCAGT
GTACTTATATACACTTCAAAAATGATTGTAGACACAGAATTGGTTTTATTTTTGTGTTTA
GTATTTAAACCTGAATATTGAAACTGTTTCCTCCTTGTCTTTATTAACAGTATATGGTCA
TTCTATTTACTCATTTTTTGACACAATGTATGTGATGGTTCACCAAATTACAATTTTTTT
CATTATTATTCATCTTCTGTATGCATGCATAACCACTATACATACCATTTCTTCTGTACT
TGAATACACACAAAGTGAACCACAGTGCCATAAGATTAACTTCACATACAGAACATATTT
TTTCCTGAGGTCCTGTGGACTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATAAAGAGAAATGAAAAATTCTATACCTGTTTTCTTTGGGACTGATTCTGAAATTCCTC
ACTGTCAAGGATATGTTAATAGCAGTATGATATTTAGCAGTGATCCATTAAGGGCAATGC
ATCTAACAAGGACTCCTCTCAGCTTCAGATATGTTACTTCCATTTTGTGCTACTTGAAGT
AATTAATGAGATTTTAAGGAATCCCCAACCCTACTATCAGAAAAGGTGTTTCTTAAAAAG
AGCCTTCTCTTACGTGGTGTGTGTGAACTTTGGTCTGTGGGGTGTTAAATGGAATCTCTC
CACCTGTATATAGTATTCCATTGTATAAAGCACTTTACTACCTACCACTTGTGTTGTGAA
AGTTTGGAGACTGCTGTTGACAGAAAGAAAAGAAAAGGGCATATAAGGAAACCTGCTGAA
ACAGAAGCACTACTACTATGTGTGGGAAAAAAGTGACCATATAAAGGAAGTTGTACCCTT
TAACCTTGAACACTTGGAGAAACTATGTGAAGAGGCAACCTGAAAGGAGAATATATTTGC
ATGAAGTCTCCGCTTCAGGCTAGAGGTTAGATTCCACGGACACTGGCTAGGAAGAAACAT
TTTTAAAAAAACAAAACAAGAAGAAACTTTAAAATAAGAGAAAGGAGTCATATGTGTAAT
AATATGTTTGGATAAAGAGGAAATGGACTTTAAATTTTAAAAAGCCCATTTATTTGCAGT
GTACTTATATACACTTCAAAAATGATTGTAGACACAGAATTGGTTTTATTTTTGTGTTTA
GTATTTAAACCTGAATATTGAAACTGTTTCCTCCTTGTCTTTATTAACAGTATATGGTCA
TTCTATTTACTCATTTTTTGACACAATGTATGTGATGGTTCACCAAATTACAATTTTTTT
CATTATTATTCATCTTCTGTATGCATGCATAACCACTATACATACCATTTCTTCTGTACT
TGAATACACACAAAGTGAACCACAGTGCCATAAGATTAACTTCACATACAGAACATATTT
TTTCCTGAGGTCCTGTGGACTTGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               18-1044, gnl|bosTau2|chr5 (36034516-36035541)
               

               
               18-1044, gnl|Hg17|chr12 (94555126-94554122)
               

               
               18-1044, gnl|Mm7|chr10 (93304967-93306017)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-1044, gnl|bosTau2|chr5 (36034516-36035541)
               

               
               18-1044, gnl|Hg17|chr12 (94555126-94554122)
               

               
               18-1044, gnl|Mm7|chr10 (93304967-93306017)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               mga (0.480615)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.480615)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	18-1044, gnl\|bosTau2\|chr5 (36034516-36035541)
	18-1044, gnl\|Hg17\|chr12 (94555126-94554122)
	18-1044, gnl\|Mm7\|chr10 (93304967-93306017)

	mga (0.480615)
	liv (0.292569)
	ret (0.257467)
	isp (0.150376)
	bfe (0.149858)
	lin (0.145603)
	csk (0.140746)
	ova (0.129132)
	jca (0.11396)
	ldo (0.0970026)