Non-Coding RNA Search

Ss1.1-rret15_a24.5

Sequence:


               
               GATGGTCAGTCCTACGATGATGTTCGAGGGCCTGCTGCTGCTGCACATGATGCAGGTATC
ACCATCTTCTCTGTTGGTGTGGCTTGGGCACCCCTGGATGACCTGAAAGACATGGCCTCT
AAACCGAAGGAGTCGCATGCTTTCTTCACAAGAGAGTTCACAGGATTAGAACCAATTGTT
TCCGATGTCATCAGAGGCATCTGTAGAGATTTCTTAGAATCTCAGCAATAATGGTGACAG
TTTTCACAACTGAAAGAAAAAGTGCAAGGGGATATAATGTATAAGTTGTATTCTAGAAAT
ACTGAAATACTATACAGCATACTAAGATCGGATACAAAATATTACATTAAAGATGCCCAA
AATGTAAGCAAATAAGCATTCATTTGAAGCTACCTTCTAATGACAATTTAGACTCAACTG
TTCAAAACACTCTACTGAGACTTCATCACGACCCTTAGAAACTATGAAGATGTCATAGAT
TAAAACTTTGAGTTCTATTTTAACATGCATATTAAATGTATACATATGCAAATTCTATAG
CTTAATAAAAGAGCCTGATATTTAGACCATAATCAACATCCCTTCTCTAATTCTATACTA
TATATATAAGGGAAATAAGAGAGAAACAAGTAGAAAACAGCTCTTTAACTTAGTTCAAAT
ATATTTTGACTCAAGTAGATGTCTTTAATCAACAATATAGATGTTACCTAATAAACTAAA
AAGTTACAATTACAGATGAAGTGGAAGGGATTTAGGTATCAAGCCTTTTTTGTAGTATAT
TTTCATAGTAACTTACAATATCACACCAAATGAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGTCAGTCCTACGATGATGTTCGAGGGCCTGCTGCTGCTGCACATGATGCAGGTATC
ACCATCTTCTCTGTTGGTGTGGCTTGGGCACCCCTGGATGACCTGAAAGACATGGCCTCT
AAACCGAAGGAGTCGCATGCTTTCTTCACAAGAGAGTTCACAGGATTAGAACCAATTGTT
TCCGATGTCATCAGAGGCATCTGTAGAGATTTCTTAGAATCTCAGCAATAATGGTGACAG
TTTTCACAACTGAAAGAAAAAGTGCAAGGGGATATAATGTATAAGTTGTATTCTAGAAAT
ACTGAAATACTATACAGCATACTAAGATCGGATACAAAATATTACATTAAAGATGCCCAA
AATGTAAGCAAATAAGCATTCATTTGAAGCTACCTTCTAATGACAATTTAGACTCAACTG
TTCAAAACACTCTACTGAGACTTCATCACGACCCTTAGAAACTATGAAGATGTCATAGAT
TAAAACTTTGAGTTCTATTTTAACATGCATATTAAATGTATACATATGCAAATTCTATAG
CTTAATAAAAGAGCCTGATATTTAGACCATAATCAACATCCCTTCTCTAATTCTATACTA
TATATATAAGGGAAATAAGAGAGAAACAAGTAGAAAACAGCTCTTTAACTTAGTTCAAAT
ATATTTTGACTCAAGTAGATGTCTTTAATCAACAATATAGATGTTACCTAATAAACTAAA
AAGTTACAATTACAGATGAAGTGGAAGGGATTTAGGTATCAAGCCTTTTTTGTAGTATAT
TTTCATAGTAACTTACAATATCACACCAAATGAGAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               90-249, - strand, RNAz p=0.823308

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-249, - strand, RNAz p=0.823308

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-816, gnl|bosTau2|chr21 (26166439-26167186)
               

               
               51-816, gnl|Hg17|chr14 (30428568-30429354)
               

               
               51-816, gnl|Mm7|chr12 (49617704-49618417)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-816, gnl|bosTau2|chr21 (26166439-26167186)
               

               
               51-816, gnl|Hg17|chr14 (30428568-30429354)
               

               
               51-816, gnl|Mm7|chr12 (49617704-49618417)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               ret (0.7724)
               

               
               fco (0.157208)
               

               
               cov (0.132153)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               fco (0.157208)
               

               
               cov (0.132153)
               

               
               tra (0.123092)

	51-816, gnl\|bosTau2\|chr21 (26166439-26167186)
	51-816, gnl\|Hg17\|chr14 (30428568-30429354)
	51-816, gnl\|Mm7\|chr12 (49617704-49618417)