Non-Coding RNA Search

Ss1.1-rret15_c23.5

Sequence:


               
               CCTGCGTGGCTCTCGTCTGTGTTAGCTGTCACAGTGTGTGCACTAATCTCTGTTGACGTT
GCCCGTGGCTGTTTTACTTGTAAGATGGTTTTTCTATTTCCTTCAGTAATGTGTCTACAG
TACGCCGTATTTCGAGTTCTGTTATACTGAAGTACTCTTGTTTTAATAGTGCCTCCCTAA
AGACCTCATCCCGGACAGAGGTCAGTCCTTGATGCTCCAGCGCAGGTGACATCGACATTG
CTAGCCGTCACTTCCCAGTCTGTTTTTCTCGATAAGGAAAGACATTTTATAATGGCATTT
CCATGGGCTGTGAGACCGTGTGCAGCTGTTTGTGTGGGCTCCTTGTAGGTGCTGTGTTCT
CAGCACCGCCTTGCTCTGAACACTGGTAATTCCAGGTGCTGCGCTCGGCAGAGGGGTCTC
GCCAAAGCGCATGTGTGTGCGTGTGTGAGTGTGTGTGTCCTTTGCGTAGCTGGGCGTGGC
TGCCTTGCTCGGGCATCAGCAGGACATCGTGTGATTAGTTACAACGCTTCCAAACTGGAA
CGCTACATTTTGTATCTTACTTTTAAAGCTCCTATAAGTAAAATAACTATTGGCTTTATT
AAAAATATACATTTAATACTTATTTGTATCTCTGTTTAAAATGACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCGTGGCTCTCGTCTGTGTTAGCTGTCACAGTGTGTGCACTAATCTCTGTTGACGTT
GCCCGTGGCTGTTTTACTTGTAAGATGGTTTTTCTATTTCCTTCAGTAATGTGTCTACAG
TACGCCGTATTTCGAGTTCTGTTATACTGAAGTACTCTTGTTTTAATAGTGCCTCCCTAA
AGACCTCATCCCGGACAGAGGTCAGTCCTTGATGCTCCAGCGCAGGTGACATCGACATTG
CTAGCCGTCACTTCCCAGTCTGTTTTTCTCGATAAGGAAAGACATTTTATAATGGCATTT
CCATGGGCTGTGAGACCGTGTGCAGCTGTTTGTGTGGGCTCCTTGTAGGTGCTGTGTTCT
CAGCACCGCCTTGCTCTGAACACTGGTAATTCCAGGTGCTGCGCTCGGCAGAGGGGTCTC
GCCAAAGCGCATGTGTGTGCGTGTGTGAGTGTGTGTGTCCTTTGCGTAGCTGGGCGTGGC
TGCCTTGCTCGGGCATCAGCAGGACATCGTGTGATTAGTTACAACGCTTCCAAACTGGAA
CGCTACATTTTGTATCTTACTTTTAAAGCTCCTATAAGTAAAATAACTATTGGCTTTATT
AAAAATATACATTTAATACTTATTTGTATCTCTGTTTAAAATGACCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-519, + strand, RNAz p=0.998653

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-519, + strand, RNAz p=0.998653

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               394-485, + strand, RNAmicro p=0.999936

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               394-485, + strand, RNAmicro p=0.999936

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               200-426, AV606749 Bos taurus kidney fetus Bos taurus cDNA clone E1KI036G01 
(dbj|AV606749.1|), blast E-value=0, identity=90.79% 
               

               
               200-426, 503578 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM089744.1|), 
blast E-value=0, identity=91.19% 
               

               
               200-416, UMJ603014483.R1 CSEQFXN30 pituitary Bos taurus cDNA, mRNA sequence 
(gb|CB172647.1|), blast E-value=0, identity=90.78% 
               

               
               200-426, 960833 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK772308.1|), 
blast E-value=0, identity=88.11% 
               

               
               200-426, UMC-bcl_0A02-008-g02 Day 14 CL from a non-pregnant animal bcl Bos 
(gb|CV974840.1|), blast E-value=0, identity=91.19% 
               

               
               200-426, LB02112.CR_G04 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE231981.1|), 
blast E-value=0, identity=90.75%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               200-426, AV606749 Bos taurus kidney fetus Bos taurus cDNA clone E1KI036G01 
(dbj|AV606749.1|), blast E-value=0, identity=90.79% 
               

               
               200-426, 503578 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM089744.1|), 
blast E-value=0, identity=91.19% 
               

               
               200-416, UMJ603014483.R1 CSEQFXN30 pituitary Bos taurus cDNA, mRNA sequence 
(gb|CB172647.1|), blast E-value=0, identity=90.78% 
               

               
               200-426, 960833 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK772308.1|), 
blast E-value=0, identity=88.11% 
               

               
               200-426, UMC-bcl_0A02-008-g02 Day 14 CL from a non-pregnant animal bcl Bos 
(gb|CV974840.1|), blast E-value=0, identity=91.19% 
               

               
               200-426, LB02112.CR_G04 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE231981.1|), 
blast E-value=0, identity=90.75%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014686, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014686, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-644, gnl|bosTau2|chr18 (37968461-37969077)
               

               
               1-644, gnl|Hg17|chr19 (39537702-39538334)
               

               
               1-644, gnl|Mm7|chr7 (31124778-31124174)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-644, gnl|bosTau2|chr18 (37968461-37969077)
               

               
               1-644, gnl|Hg17|chr19 (39537702-39538334)
               

               
               1-644, gnl|Mm7|chr7 (31124778-31124174)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               aor (0.195274)
               

               
               sag (0.182715)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               eep (0.122564)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               eep (0.122564)

	200-426, AV606749 Bos taurus kidney fetus Bos taurus cDNA clone E1KI036G01 (dbj\|AV606749.1\|), blast E-value=0, identity=90.79%
	200-426, 503578 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM089744.1\|), blast E-value=0, identity=91.19%
	200-416, UMJ603014483.R1 CSEQFXN30 pituitary Bos taurus cDNA, mRNA sequence (gb\|CB172647.1\|), blast E-value=0, identity=90.78%
	200-426, 960833 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK772308.1\|), blast E-value=0, identity=88.11%
	200-426, UMC-bcl_0A02-008-g02 Day 14 CL from a non-pregnant animal bcl Bos (gb\|CV974840.1\|), blast E-value=0, identity=91.19%
	200-426, LB02112.CR_G04 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb\|EE231981.1\|), blast E-value=0, identity=90.75%

	1-644, gnl\|bosTau2\|chr18 (37968461-37969077)
	1-644, gnl\|Hg17\|chr19 (39537702-39538334)
	1-644, gnl\|Mm7\|chr7 (31124778-31124174)

	aor (0.195274)
	sag (0.182715)
	che (0.136314)
	ret (0.128733)
	eep (0.122564)