Non-Coding RNA Search

Ss1.1-rret15_d5.5

Sequence:


               
               GTCATATTTATAAAGCCATCTAGCATGAGTTGTATGAAGCGATCTCGGAAAAATGCCAAG
ATCATTACAGACTACTTTGTGGACATGAAGTTCAAGGAGGAAGATCTACAAGAGATGGAG
GATTTAGCCCAGAAAATGGAGTCTCAGTTTGGCCAGTTTTTTGATCACGTGATTGTGAAT
GACAACTTGCAAGATGCATGTGCTCAATTGCTGTCTGCAGTTCAGAAGGCTCAGGAGGAG
CCTCAGTGGGTACCAGCAACATGGGTTTCCTCTGATAACTGAGTCTTAAGGAGACCTGCT
TCATACTGGAATTTTAAACAATGTTCACTTGTTAAAGAGAGCTGGAAAAATAGCTGTAAT
TTAAAACAGTAGTATTGTACTATTTGCCCTATTATAATGTGTGCAACTTCAAAAGTGTTG
TGGTTTGCTAATTAATCTTGCTTGAAAAAAAATTGTAAGGTATGGTTATCTAGAGTTATC
TATTTGGTTTTTAGGGGAAAAAAAAGTTTTCCTTTACTTCATATACTGCATTTGATAGGG
ATATAAACAATGCTAAGTCACCGAGTATGAGGATATTTCATAGATTTCACATGGCCTTTG
TATGATTCAGATAAGAAGAGCTTTCCTAAATAAAATTAGTGTCTAATTTCAAAAACTGCA
TTTTACCTTATGAAACTTCTGTTTCATGAACATGAATTTTACAAAAAGTGTCTACTTGAC
TAACTGCAAGAAGCATTAATACACACATTTCACATCTAACACCAGAACTTACAGAAAACA
GCACTGCTCCCATCATTTTACACATTAGGCTACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATATTTATAAAGCCATCTAGCATGAGTTGTATGAAGCGATCTCGGAAAAATGCCAAG
ATCATTACAGACTACTTTGTGGACATGAAGTTCAAGGAGGAAGATCTACAAGAGATGGAG
GATTTAGCCCAGAAAATGGAGTCTCAGTTTGGCCAGTTTTTTGATCACGTGATTGTGAAT
GACAACTTGCAAGATGCATGTGCTCAATTGCTGTCTGCAGTTCAGAAGGCTCAGGAGGAG
CCTCAGTGGGTACCAGCAACATGGGTTTCCTCTGATAACTGAGTCTTAAGGAGACCTGCT
TCATACTGGAATTTTAAACAATGTTCACTTGTTAAAGAGAGCTGGAAAAATAGCTGTAAT
TTAAAACAGTAGTATTGTACTATTTGCCCTATTATAATGTGTGCAACTTCAAAAGTGTTG
TGGTTTGCTAATTAATCTTGCTTGAAAAAAAATTGTAAGGTATGGTTATCTAGAGTTATC
TATTTGGTTTTTAGGGGAAAAAAAAGTTTTCCTTTACTTCATATACTGCATTTGATAGGG
ATATAAACAATGCTAAGTCACCGAGTATGAGGATATTTCATAGATTTCACATGGCCTTTG
TATGATTCAGATAAGAAGAGCTTTCCTAAATAAAATTAGTGTCTAATTTCAAAAACTGCA
TTTTACCTTATGAAACTTCTGTTTCATGAACATGAATTTTACAAAAAGTGTCTACTTGAC
TAACTGCAAGAAGCATTAATACACACATTTCACATCTAACACCAGAACTTACAGAAAACA
GCACTGCTCCCATCATTTTACACATTAGGCTACAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               133-252, + strand, RNAz p=0.544182

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-252, + strand, RNAz p=0.544182

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               94-815, gnl|bosTau2|chr2 (52809459-52810161)
               

               
               94-815, gnl|Hg17|chr2 (202335636-202334944)
               

               
               94-815, gnl|Mm7|chr1 (59372605-59371980)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-815, gnl|bosTau2|chr2 (52809459-52810161)
               

               
               94-815, gnl|Hg17|chr2 (202335636-202334944)
               

               
               94-815, gnl|Mm7|chr1 (59372605-59371980)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.514933)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)

	94-815, gnl\|bosTau2\|chr2 (52809459-52810161)
	94-815, gnl\|Hg17\|chr2 (202335636-202334944)
	94-815, gnl\|Mm7\|chr1 (59372605-59371980)