Ss1.1-rret15_g12.5
|
TCTGATTCAGTCAGGCAGGTACACACCCGGTTGGGAGTCTGCAGCTGAGCCAGGCGAGGG
TGGGGCGCTGGTTGGCAGGAAAGTCCGATAGGGGAATGCAGTCCTTGCTGCTCTTCGTCG
TGTGCATCGCTCTTCCACGTTTTCTCAGAGCAGATGTTTTTGAGAATGTAAGTGTGAACA
ATGAGACAGCTTCAGTAGGCCAGCCTACAGCTTTTAATTGCATATGCTATCTGCCAACAT
CTGGGAAAGTAGTAGATGTGACATGGTATAAGTATCCTAGCAAAATCCCAATATCTAAAA
ACATACAGTCCAGAATTCACCAGGACCAAGGCTGGATTTTGTTTCTCCCCCTGAAAGGAG
AGGACTCTGGGATCTACCAATGTGATACAAATGACACAAACATCTGCCCCAGAATGCAAA
TCAACCTAACTGTGTTTCAAAAGCATTGGTGTCGTACTTCTAAAAAGAGTCAACCAAATG
TAGCAGATGAGTACAAACAAATCCTACACGTTGGAAAAGATGATATTCTTATATGTTATC
TGAACTTCCCGAACAGTTTTGTTTTGAATTCAATCAAGTGGTATAAGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTGATTCAGTCAGGCAGGTACACACCCGGTTGGGAGTCTGCAGCTGAGCCAGGCGAGGG
TGGGGCGCTGGTTGGCAGGAAAGTCCGATAGGGGAATGCAGTCCTTGCTGCTCTTCGTCG
TGTGCATCGCTCTTCCACGTTTTCTCAGAGCAGATGTTTTTGAGAATGTAAGTGTGAACA
ATGAGACAGCTTCAGTAGGCCAGCCTACAGCTTTTAATTGCATATGCTATCTGCCAACAT
CTGGGAAAGTAGTAGATGTGACATGGTATAAGTATCCTAGCAAAATCCCAATATCTAAAA
ACATACAGTCCAGAATTCACCAGGACCAAGGCTGGATTTTGTTTCTCCCCCTGAAAGGAG
AGGACTCTGGGATCTACCAATGTGATACAAATGACACAAACATCTGCCCCAGAATGCAAA
TCAACCTAACTGTGTTTCAAAAGCATTGGTGTCGTACTTCTAAAAAGAGTCAACCAAATG
TAGCAGATGAGTACAAACAAATCCTACACGTTGGAAAAGATGATATTCTTATATGTTATC
TGAACTTCCCGAACAGTTTTGTTTTGAATTCAATCAAGTGGTATAAGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
183-391, gnl|bosTau2|chr11 (7408844-7409049) |
|
183-391, gnl|canFam2|chr10 (43939488-43939111) |
|
183-391, gnl|dasNov1|scaffold_193109 (916-535) |
|
183-391, gnl|echTel1|scaffold_173840 (254-644) |
|
183-391, gnl|hg17|chr2 (102263933-102264320) |
|
183-391, gnl|Hg17|chr2 (102264083-102264288) |
|
183-391, gnl|loxAfr1|scaffold_1970 (100693-100300) |
|
183-391, gnl|mm7|chr1 (40567092-40567492) |
|
183-391, gnl|Mm7|chr1 (40567252-40567460) |
|
183-391, gnl|monDom2|scaffold_11 (20383435-20383044) |
|
183-391, gnl|panTro1|chr12 (105160618-105161005) |
|
183-391, gnl|rheMac2|chr13 (102122501-102122883) |
|
183-391, gnl|rn3|chr9 (39495139-39495534) |
| |
|
392-588, gnl|bosTau2|chr11 (7412895-7413091) |
|
392-588, gnl|Hg17|chr2 (102266903-102267099) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
183-391, gnl|bosTau2|chr11 (7408844-7409049) |
|
183-391, gnl|canFam2|chr10 (43939488-43939111) |
|
183-391, gnl|dasNov1|scaffold_193109 (916-535) |
|
183-391, gnl|echTel1|scaffold_173840 (254-644) |
|
183-391, gnl|hg17|chr2 (102263933-102264320) |
|
183-391, gnl|Hg17|chr2 (102264083-102264288) |
|
183-391, gnl|loxAfr1|scaffold_1970 (100693-100300) |
|
183-391, gnl|mm7|chr1 (40567092-40567492) |
|
183-391, gnl|Mm7|chr1 (40567252-40567460) |
|
183-391, gnl|monDom2|scaffold_11 (20383435-20383044) |
|
183-391, gnl|panTro1|chr12 (105160618-105161005) |
|
183-391, gnl|rheMac2|chr13 (102122501-102122883) |
|
183-391, gnl|rn3|chr9 (39495139-39495534) |
| |
|
392-588, gnl|bosTau2|chr11 (7412895-7413091) |
|
392-588, gnl|Hg17|chr2 (102266903-102267099) |
|
csk (0.140746) |
|
ret (0.128733) |
|
cbl (0.114797) |
|
csk (0.140746) |
|
ret (0.128733) |
|
cbl (0.114797) |
