Non-Coding RNA Search

Ss1.1-rret15_g21.5

Sequence:


               
               TCCGGCCCCGGCCCATTCGCTGTTCGGTCTTCTGCAGGGAGGATGTTGGGCTCGTCGCTT
CCCAGCGCCCTGGCCCTCTCGCTGTTGCTGGTCTCTGGCTCCCTCCTTCCAGGACCAGGC
GCCGCTCAAAACGAGCCAAGGATTGTCACCAGTGAAGAAGTCATTATTCGAGAAAGTCCT
GTGCTCCCTGTCACCCTGCAGTGTAACCTCACCTCCAACTCCCACACCCTTACATACAGC
TACTGGACAAAGAATGGAGTAGAACTGACTGCCACTCGTAAGAATGCCAGCAATATGGAA
TACAGGATCAATAAGCCAAGAGCTGAGGATTCAGGCGAATACCACTGTGTATATCACTTT
GCCAGTGCTCCTAAAGCAAATGCCACCATTGAAGTGAAAGCTGCTCCTGACATCACTGGC
CATAAACGGAGCGAGAACAAGAATGAAGGGCAGGATGCCATGATGTACTGCAAGTCAGTT
GGCTACCCCCATCCAGAGTGGATCTGGCGCAAGAAGGAGAATGGTATGCTCGTGGATATT
GTCAACACTTCTGGCCGCTTCATCATCATCAACAGGGAAAATTACACTGAGCTGAGCATC
ATGAACCTGCAGATCACTGAAGACCCTGGCGAGTATGAATGTAATGCTACCAACTCCATT
GGCTCTGTCTCCGTTGTCACCATCCTCAGGGTACGGAGCCACCTGGCCCCACTCTGGCCT
TTCTTGGGAATTCTGGCAGAAATCATCATCCTTGTGGTGATCATTGTTGTGTATGAGAAG
AGGAAGAGGCCAGATGAAGTTCCTGACGATGATGAACCAGCTGGGCCAATGAAAACCAAC
TCTACCAACAATCACAAAGATAAAAACTTGCGCCAGAGAAACACAAATTAAGTACTTCTT
ATAATATCTTTAGGTTCCTGAAACTGGTGGCAACATGACCTGCTAAATTTTCTGCTTGGA
CCTCTTTGGTTCTTTCCCCTTTCAAGTGAGCAGCACCACGACGACTGTCTAAAGCATGCC
TTATTTAGCCTCTCCTGTAAGGGTGACCTAGCCAGGTACATTTTAAACAATGCTTCAGTG
TAGAAGGTGTAAACTATTTTGGGCTTGATGTGCTGTGAATGTTGCTTTTTCCCCCTTTGT
TAAAATATTTAAATAGAAGTGAAAAGGTCCTCTGAGGATCAGATCGTGCATGCGCCATTT
TTTACTTAATGCAGCTGTTAAATTGGCAAAGCTCTAAAATGCACTGCTGCCATCTAGTGA
TACATTTTTGTAAAGTACAGCAAAACCTACAGATATATACAGTATATAAATATATAAATA
TATATTTATATTTTTGGGGGTGGGAGAGATCCAAAATAAAATAAATGCTTGTTTCATTTT
TAAGCTGCTGATACTCATTCCTTATTGTATGTTGTCAGATGAGGAATTTGTGCAGTTCTG
GTACATGAAGATGAGTAATATAAACTGAAATTTTAATTTTAAGGGCTTAACCTATGACCT
TTGATAAAAAGCTGGAACAGTCCACTGAATGGATATAATGAATTGCAGTATATATGTATG
ATTGCTTTTTAAGTGATTTCTTTTCTTAAATCATGTAAATTCTTAAATCCTTTTGCACTG
ATGTGTTGAACCTTATTGTACATTCGATTAAGGCAAACTTTTATAATTTACCTTTTGTTT
AAATGACCTTGAAATGTTATAGCATGGTATTCTATGCAACTAGTTATACTCTGGGGTTGA
CACTGTATTTTTTCATTGATTTAATGGTTGAGTGTAGATTTTCTCACCCGACAGGGTTCT
CATGCGGTGCGTAATGGTAGATGCATGTACTTGTGTTTTGTGTAATTGTTGAAGTGCAAT
GATGTATAAAAAAGTGGATTCACCTGTTTTTAAAAATAAAACATTGATAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGGCCCCGGCCCATTCGCTGTTCGGTCTTCTGCAGGGAGGATGTTGGGCTCGTCGCTT
CCCAGCGCCCTGGCCCTCTCGCTGTTGCTGGTCTCTGGCTCCCTCCTTCCAGGACCAGGC
GCCGCTCAAAACGAGCCAAGGATTGTCACCAGTGAAGAAGTCATTATTCGAGAAAGTCCT
GTGCTCCCTGTCACCCTGCAGTGTAACCTCACCTCCAACTCCCACACCCTTACATACAGC
TACTGGACAAAGAATGGAGTAGAACTGACTGCCACTCGTAAGAATGCCAGCAATATGGAA
TACAGGATCAATAAGCCAAGAGCTGAGGATTCAGGCGAATACCACTGTGTATATCACTTT
GCCAGTGCTCCTAAAGCAAATGCCACCATTGAAGTGAAAGCTGCTCCTGACATCACTGGC
CATAAACGGAGCGAGAACAAGAATGAAGGGCAGGATGCCATGATGTACTGCAAGTCAGTT
GGCTACCCCCATCCAGAGTGGATCTGGCGCAAGAAGGAGAATGGTATGCTCGTGGATATT
GTCAACACTTCTGGCCGCTTCATCATCATCAACAGGGAAAATTACACTGAGCTGAGCATC
ATGAACCTGCAGATCACTGAAGACCCTGGCGAGTATGAATGTAATGCTACCAACTCCATT
GGCTCTGTCTCCGTTGTCACCATCCTCAGGGTACGGAGCCACCTGGCCCCACTCTGGCCT
TTCTTGGGAATTCTGGCAGAAATCATCATCCTTGTGGTGATCATTGTTGTGTATGAGAAG
AGGAAGAGGCCAGATGAAGTTCCTGACGATGATGAACCAGCTGGGCCAATGAAAACCAAC
TCTACCAACAATCACAAAGATAAAAACTTGCGCCAGAGAAACACAAATTAAGTACTTCTT
ATAATATCTTTAGGTTCCTGAAACTGGTGGCAACATGACCTGCTAAATTTTCTGCTTGGA
CCTCTTTGGTTCTTTCCCCTTTCAAGTGAGCAGCACCACGACGACTGTCTAAAGCATGCC
TTATTTAGCCTCTCCTGTAAGGGTGACCTAGCCAGGTACATTTTAAACAATGCTTCAGTG
TAGAAGGTGTAAACTATTTTGGGCTTGATGTGCTGTGAATGTTGCTTTTTCCCCCTTTGT
TAAAATATTTAAATAGAAGTGAAAAGGTCCTCTGAGGATCAGATCGTGCATGCGCCATTT
TTTACTTAATGCAGCTGTTAAATTGGCAAAGCTCTAAAATGCACTGCTGCCATCTAGTGA
TACATTTTTGTAAAGTACAGCAAAACCTACAGATATATACAGTATATAAATATATAAATA
TATATTTATATTTTTGGGGGTGGGAGAGATCCAAAATAAAATAAATGCTTGTTTCATTTT
TAAGCTGCTGATACTCATTCCTTATTGTATGTTGTCAGATGAGGAATTTGTGCAGTTCTG
GTACATGAAGATGAGTAATATAAACTGAAATTTTAATTTTAAGGGCTTAACCTATGACCT
TTGATAAAAAGCTGGAACAGTCCACTGAATGGATATAATGAATTGCAGTATATATGTATG
ATTGCTTTTTAAGTGATTTCTTTTCTTAAATCATGTAAATTCTTAAATCCTTTTGCACTG
ATGTGTTGAACCTTATTGTACATTCGATTAAGGCAAACTTTTATAATTTACCTTTTGTTT
AAATGACCTTGAAATGTTATAGCATGGTATTCTATGCAACTAGTTATACTCTGGGGTTGA
CACTGTATTTTTTCATTGATTTAATGGTTGAGTGTAGATTTTCTCACCCGACAGGGTTCT
CATGCGGTGCGTAATGGTAGATGCATGTACTTGTGTTTTGTGTAATTGTTGAAGTGCAAT
GATGTATAAAAAAGTGGATTCACCTGTTTTTAAAAATAAAACATTGATAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|5442038|gb|AAD43218.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5442038|gb|AAD43218.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1375-1912, gnl|bosTau2|chr14 (47579469-47580000)
               

               
               1375-1912, gnl|Hg17|chr15 (71639968-71639412)
               

               
               1375-1912, gnl|Mm7|chr9 (58680996-58681545)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1375-1912, gnl|bosTau2|chr14 (47579469-47580000)
               

               
               1375-1912, gnl|Hg17|chr15 (71639968-71639412)
               

               
               1375-1912, gnl|Mm7|chr9 (58680996-58681545)

Expressed library(ies): 55 entry(ies)

More info

Expressed library(ies): 55 entry(ies)

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               cbe (3.34928)
               

               
               ova (1.03306)
               

               
               fco (0.943248)
               

               
               tbr (0.925069)
               

               
               ret (0.901133)
               

               
               fce (0.814775)
               

               
               aor (0.781097)
               

               
               liv (0.731422)
               

               
               mgm (0.721371)
               

               
               rec (0.692281)
               

               
               nms (0.641574)
               

               
               mga (0.64082)
               

               
               tes (0.623441)
               

               
               bfe (0.599431)
               

               
               sag (0.548145)
               

               
               sin (0.524843)
               

               
               tra (0.492368)
               

               
               lun (0.451467)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 55 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (3.34928)
               

               
               ova (1.03306)
               

               
               fco (0.943248)
               

               
               tbr (0.925069)
               

               
               ret (0.901133)
               

               
               fce (0.814775)
               

               
               aor (0.781097)
               

               
               liv (0.731422)
               

               
               mgm (0.721371)
               

               
               rec (0.692281)
               

               
               nms (0.641574)
               

               
               mga (0.64082)
               

               
               tes (0.623441)
               

               
               bfe (0.599431)
               

               
               sag (0.548145)
               

               
               sin (0.524843)
               

               
               tra (0.492368)
               

               
               lun (0.451467)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1375-1912, gnl\|bosTau2\|chr14 (47579469-47580000)
	1375-1912, gnl\|Hg17\|chr15 (71639968-71639412)
	1375-1912, gnl\|Mm7\|chr9 (58680996-58681545)

	cbe (3.34928)
	ova (1.03306)
	fco (0.943248)
	tbr (0.925069)
	ret (0.901133)
	fce (0.814775)
	aor (0.781097)
	liv (0.731422)
	mgm (0.721371)
	rec (0.692281)
	nms (0.641574)
	mga (0.64082)
	tes (0.623441)
	bfe (0.599431)
	sag (0.548145)
	sin (0.524843)
	tra (0.492368)
	lun (0.451467)
	lin (0.436808)
	spl (0.429553)
	ste (0.405625)
	lyg (0.399308)
	kid (0.389206)
	elu (0.385356)
	gul (0.355177)
	fhi (0.339155)
	sme (0.305437)
	isp (0.300752)
	nbm (0.297974)
	jej (0.296765)
	hyp (0.285673)
	sug (0.254582)
	med (0.232504)
	mgp (0.230681)
	cbl (0.229595)
	cty (0.20816)
	hea (0.204499)
	fcc (0.197785)
	ldo (0.194005)
	nlu (0.191681)
	ill (0.175593)
	eye (0.170503)
	nco (0.161734)
	cli (0.152812)
	fat (0.147427)
	ski (0.146735)
	nmm (0.132802)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)
	clu (0.119646)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)
	eje (0.0988338)