Non-Coding RNA Search

Ss1.1-rret15_j3.5

Sequence:


               
               GCTCAGCACAGCGCCACTGGGGGCTCTGCAGCGGGCGGCGGCCGGGCCCCCCAACTCTGT
CGGCGTCGAGCAGGTGGTTGCTGAAGACAGTCGGGCTTCTGAGCGGCGGGTTCAGGCGCT
CCCGACTCAGAGGAGACAGTCTTCAGAGAGGCAATACCTCCTGTGAACTTAGGGCAGGAA
GCAATACTTCAGAATTGAATGTGTGTAAATAGTTGCTTTGAGTTGCAATTGCTCCTTTCT
TCTTGGCCTCAGGTCAGATCAGATTATATATATATATATAAACAAGCACACAAAATTGTA
TCCAATACAGACAAATGCAGAGCATCAGTTATGAAGCCCTTAAGGAGCTTTGGGGGCCAC
ACAGATGGTGCGGCTCCATCACCCTGACTTCACCCTGGAGACACCTGCACATTTGCACTT
GACAGTCGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGCACAGCGCCACTGGGGGCTCTGCAGCGGGCGGCGGCCGGGCCCCCCAACTCTGT
CGGCGTCGAGCAGGTGGTTGCTGAAGACAGTCGGGCTTCTGAGCGGCGGGTTCAGGCGCT
CCCGACTCAGAGGAGACAGTCTTCAGAGAGGCAATACCTCCTGTGAACTTAGGGCAGGAA
GCAATACTTCAGAATTGAATGTGTGTAAATAGTTGCTTTGAGTTGCAATTGCTCCTTTCT
TCTTGGCCTCAGGTCAGATCAGATTATATATATATATATAAACAAGCACACAAAATTGTA
TCCAATACAGACAAATGCAGAGCATCAGTTATGAAGCCCTTAAGGAGCTTTGGGGGCCAC
ACAGATGGTGCGGCTCCATCACCCTGACTTCACCCTGGAGACACCTGCACATTTGCACTT
GACAGTCGAGAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               77-432, gnl|bosTau2|chr25 (4033881-4033523)
               

               
               77-432, gnl|Hg17|chr16 (3953338-3952932)
               

               
               77-432, gnl|Mm7|chr16 (3957083-3956733)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-432, gnl|bosTau2|chr25 (4033881-4033523)
               

               
               77-432, gnl|Hg17|chr16 (3953338-3952932)
               

               
               77-432, gnl|Mm7|chr16 (3957083-3956733)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               vin (0.332557)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ret (0.128733)

	77-432, gnl\|bosTau2\|chr25 (4033881-4033523)
	77-432, gnl\|Hg17\|chr16 (3953338-3952932)
	77-432, gnl\|Mm7\|chr16 (3957083-3956733)