Non-Coding RNA Search

Ss1.1-rret16_a20.5

Sequence:


               
               AGGTAGACACACGCCTGCCCATGAACGCTCCAGTTCTGGGTGCCGAGAGGGTGCTGCTTT
CACAAAGAAAGAGGGATCAACTGCCTCACAGAAGTAGCTTTTGAACTAGACTTTGACCAG
TGAACTTGATTTTAAGAGACAGAAGAGGAAGGAGGGTAGTTATTGACCCTCAAGAAGAAT
GGATCTAAAAACCTCTTTTCCATGCAATGTTGAGCATGAATTACAGTCACAAATAAGGAA
GCAGAGCAGCTTTAACCTTCACCTTTGGATTCCTGGTTCCCAGCTAGCGTTTTACAGCTA
TTGCTGGGGAAGTTGTGTCAGGAATAGGGTGTGTGCTGAAAGAAGTCGATTGTTCATGAA
AATGGACAATCCTGGTGCATTTAAAAAGCATTTTTAGAGATCAGGGATTGGTAAGTGCAT
CAATGCAGAAATGTGAAATAAGAGTGGTATTCAAAGTATGTCCCTAGCAAAGGTTGTATT
TACAGGAAAAATTTTAGGAAGCTTGGTGTCACTGCTGGCCAGTGGCTCGGCTATTGGTGG
ATGTGCATTGTGACCAGTGGCTGCAGAACACCCTGCATGTCCATTGTGTGGATGCACCAC
ATTGATTAAATCAACTCCCAAGGTAGGGAAAGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTAGACACACGCCTGCCCATGAACGCTCCAGTTCTGGGTGCCGAGAGGGTGCTGCTTT
CACAAAGAAAGAGGGATCAACTGCCTCACAGAAGTAGCTTTTGAACTAGACTTTGACCAG
TGAACTTGATTTTAAGAGACAGAAGAGGAAGGAGGGTAGTTATTGACCCTCAAGAAGAAT
GGATCTAAAAACCTCTTTTCCATGCAATGTTGAGCATGAATTACAGTCACAAATAAGGAA
GCAGAGCAGCTTTAACCTTCACCTTTGGATTCCTGGTTCCCAGCTAGCGTTTTACAGCTA
TTGCTGGGGAAGTTGTGTCAGGAATAGGGTGTGTGCTGAAAGAAGTCGATTGTTCATGAA
AATGGACAATCCTGGTGCATTTAAAAAGCATTTTTAGAGATCAGGGATTGGTAAGTGCAT
CAATGCAGAAATGTGAAATAAGAGTGGTATTCAAAGTATGTCCCTAGCAAAGGTTGTATT
TACAGGAAAAATTTTAGGAAGCTTGGTGTCACTGCTGGCCAGTGGCTCGGCTATTGGTGG
ATGTGCATTGTGACCAGTGGCTGCAGAACACCCTGCATGTCCATTGTGTGGATGCACCAC
ATTGATTAAATCAACTCCCAAGGTAGGGAAAGGGAG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               4-636, gnl|bosTau2|chr23 (6458175-6458826)
               

               
               4-636, gnl|Hg17|chr7 (8035740-8035089)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-636, gnl|bosTau2|chr23 (6458175-6458826)
               

               
               4-636, gnl|Hg17|chr7 (8035740-8035089)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               tra (0.123092)

	4-636, gnl\|bosTau2\|chr23 (6458175-6458826)
	4-636, gnl\|Hg17\|chr7 (8035740-8035089)