Non-Coding RNA Search

Ss1.1-rret16_d23.5

Sequence:


               
               TTTAAAGCAATTTATCTTGAAATTAAATTTTATCAGGCTACCAACATCTTACTTACTCAT
GTAATGAACACATTTTTTTTGAAAACCTGTAATTGCCAGGTACCACACAAGTTAGGTATC
ATCATTATACTGTGGACAGACCAGACAGGGCAGTTCCTGTCCTCATGGAGCTTATGGTCT
AGTGAAAACAGCCGAGAGGAAGTGGAAGCAGAGGCTCTTTAAGCCTCTGCAGCTCACTGC
CAGACCCTGTCAGAAGAAAGTTCACTCGTGGAAGCAGTTCACCCAGAAGTCTTACTCTGG
CCTAAAGCTTTGGGAAATGAATCCTTGCTGAGGTAGGCTGAGAGCAGATTGCCATTTTCA
TGCTGGTTCTTTACAGTTCCTAACTTTTTTTCACAGTTTGATGTTTGTTTTTTAAGAAGA
AGGAAAAAATCCAAAGACCGTAAAATGGCATTCGATTTTTGCCATTTTAGTAAATTATTA
TTGTCTACTTGATGCTCCTATAAGATGAATCTAATCAACTTGTCATGTATATTTCCAAAT
TTTGTTTTGTAGTATATTATTTTCTAAAGATTTTTACCTGGAATTTTAGACCAAGATTTA
CCAGTAGAAGGAAAAAAGCATTAGAAACCATTAATATTGTAAATGTTATATATGCTACCT
TGGTGAAAATATTTTTATCAATCATGTTATTCAGTATTGTTAATTTGCCTTATAAATGTT
AGTTCTAGTAGTTTATCTTCCAATACCTTTTTAAAACAATTCTTTTTGGACACTGAGATT
GTTCATTTTTAACACCAGTAGGTGGCACTAGAAATGTGAAGGTTTTCAAGGCTGAACAGG
AGAAGATAATCAAAAAAAGAATCAAAACAGAATTTTCAGTAAAATAAATGAGAAATATAA
TTGTATATTAAAGATGTATTTTTTCTTCTGGAATGAAGTTCTTTTTTAAAATGCATATGG
CTTTCCATTTTGACTATATGAAACTTGTTATCTTCCAAAGTTCATATATATATATGTGTG
TGTGTGTGTATGCACTGTACAGATAATCTTTAGTTTGATTACACTGTTCATTTTGTAAAT
ATGTTTCTGTATAAAATGAAGCTTTTTGAGATAATTTTATGTATATATTGTACTTATTAA
ATAGGTAATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAAGCAATTTATCTTGAAATTAAATTTTATCAGGCTACCAACATCTTACTTACTCAT
GTAATGAACACATTTTTTTTGAAAACCTGTAATTGCCAGGTACCACACAAGTTAGGTATC
ATCATTATACTGTGGACAGACCAGACAGGGCAGTTCCTGTCCTCATGGAGCTTATGGTCT
AGTGAAAACAGCCGAGAGGAAGTGGAAGCAGAGGCTCTTTAAGCCTCTGCAGCTCACTGC
CAGACCCTGTCAGAAGAAAGTTCACTCGTGGAAGCAGTTCACCCAGAAGTCTTACTCTGG
CCTAAAGCTTTGGGAAATGAATCCTTGCTGAGGTAGGCTGAGAGCAGATTGCCATTTTCA
TGCTGGTTCTTTACAGTTCCTAACTTTTTTTCACAGTTTGATGTTTGTTTTTTAAGAAGA
AGGAAAAAATCCAAAGACCGTAAAATGGCATTCGATTTTTGCCATTTTAGTAAATTATTA
TTGTCTACTTGATGCTCCTATAAGATGAATCTAATCAACTTGTCATGTATATTTCCAAAT
TTTGTTTTGTAGTATATTATTTTCTAAAGATTTTTACCTGGAATTTTAGACCAAGATTTA
CCAGTAGAAGGAAAAAAGCATTAGAAACCATTAATATTGTAAATGTTATATATGCTACCT
TGGTGAAAATATTTTTATCAATCATGTTATTCAGTATTGTTAATTTGCCTTATAAATGTT
AGTTCTAGTAGTTTATCTTCCAATACCTTTTTAAAACAATTCTTTTTGGACACTGAGATT
GTTCATTTTTAACACCAGTAGGTGGCACTAGAAATGTGAAGGTTTTCAAGGCTGAACAGG
AGAAGATAATCAAAAAAAGAATCAAAACAGAATTTTCAGTAAAATAAATGAGAAATATAA
TTGTATATTAAAGATGTATTTTTTCTTCTGGAATGAAGTTCTTTTTTAAAATGCATATGG
CTTTCCATTTTGACTATATGAAACTTGTTATCTTCCAAAGTTCATATATATATATGTGTG
TGTGTGTGTATGCACTGTACAGATAATCTTTAGTTTGATTACACTGTTCATTTTGTAAAT
ATGTTTCTGTATAAAATGAAGCTTTTTGAGATAATTTTATGTATATATTGTACTTATTAA
ATAGGTAATGCC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               968-1152, gnl|bosTau2|chr11 (18529171-18529347)
               

               
               968-1152, gnl|Hg17|chr10 (115870797-115870621)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               968-1152, gnl|bosTau2|chr11 (18529171-18529347)
               

               
               968-1152, gnl|Hg17|chr10 (115870797-115870621)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

	968-1152, gnl\|bosTau2\|chr11 (18529171-18529347)
	968-1152, gnl\|Hg17\|chr10 (115870797-115870621)

	ret (0.514933)
	lin (0.436808)
	pla (0.267344)
	mgp (0.230681)
	eye (0.170503)
	bfe (0.149858)
	liv (0.146284)
	pty (0.142714)
	ste (0.135208)
	thg (0.126791)
	tra (0.123092)
	jej (0.0989218)