Non-Coding RNA Search

Ss1.1-rret16_f23.5

Sequence:


               
               GATAAGTTGTAATGTTATAAGGTTTGCCACTAATTTTATATCAGCCCTGAAGTAACTTCA
CTGAAATTTTCTGACTTAGTAGAAAAGTTGAAAATCCTATTCTCGGCTCTATAGCAAGAA
AAGTAATAAACACATGAATTTCCTCAACATTTTCAAGCCAGTTAAAGATATGTAAGATAC
ACACCAATATCTTCTCCAGGCTCCGACAGGCCTCCTGGAAATTTCCACATATTTTTCAAC
TGCAGAATAAAAATCAGAAAATACAGTTAATATAGCTTTTATTCATTAACACACAAACAT
GGAGATGCCACAAAATCTACTCAAAATTTGTCAAGTTGTTTGAGAATTTATTTTTTGGTA
CCTGCACCCCAATTTTTTCCAGCTTCCTTCCTCTCACTCCTTTTTTGGAGAAATTGGTGA
TTTGTGAAGTCTTTTCCCACCTTTTTCTTCAGGAAATATAAGTGGTTTTGTTTGGTTAAT
GGGTTAATGTGATAAATTCTGTCTGAATAAAAACAGTAGGGAAAGGGGACATCTACTGAA
TTTGTATAGTTTAAAAAATCTTGCTGCTACTTTATTAAAAAAAATAGAGGAATCTTACTG
ATGCTGCTATAAGTAAATAGAAAATATAGTATAATTTTAATCACTAAAATATGCTATTTT
TAATTTTCACACTTATTTTCTATATTGTGTGTCTAATCAGATATATTAACCTTAAGATTT
CTCTTGTTCTCTGTGTTAAAGACCTTATGTAAAAATGTAATTGCTTTTCATGAGAAGTTG
TGAATAAAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAAGTTGTAATGTTATAAGGTTTGCCACTAATTTTATATCAGCCCTGAAGTAACTTCA
CTGAAATTTTCTGACTTAGTAGAAAAGTTGAAAATCCTATTCTCGGCTCTATAGCAAGAA
AAGTAATAAACACATGAATTTCCTCAACATTTTCAAGCCAGTTAAAGATATGTAAGATAC
ACACCAATATCTTCTCCAGGCTCCGACAGGCCTCCTGGAAATTTCCACATATTTTTCAAC
TGCAGAATAAAAATCAGAAAATACAGTTAATATAGCTTTTATTCATTAACACACAAACAT
GGAGATGCCACAAAATCTACTCAAAATTTGTCAAGTTGTTTGAGAATTTATTTTTTGGTA
CCTGCACCCCAATTTTTTCCAGCTTCCTTCCTCTCACTCCTTTTTTGGAGAAATTGGTGA
TTTGTGAAGTCTTTTCCCACCTTTTTCTTCAGGAAATATAAGTGGTTTTGTTTGGTTAAT
GGGTTAATGTGATAAATTCTGTCTGAATAAAAACAGTAGGGAAAGGGGACATCTACTGAA
TTTGTATAGTTTAAAAAATCTTGCTGCTACTTTATTAAAAAAAATAGAGGAATCTTACTG
ATGCTGCTATAAGTAAATAGAAAATATAGTATAATTTTAATCACTAAAATATGCTATTTT
TAATTTTCACACTTATTTTCTATATTGTGTGTCTAATCAGATATATTAACCTTAAGATTT
CTCTTGTTCTCTGTGTTAAAGACCTTATGTAAAAATGTAATTGCTTTTCATGAGAAGTTG
TGAATAAAACTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-792, gnl|bosTau2|chr17 (20112201-20111427)
               

               
               2-792, gnl|Hg17|chr4 (124176199-124176970)
               

               
               2-792, gnl|Mm7|chr3 (37220107-37220872)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-792, gnl|bosTau2|chr17 (20112201-20111427)
               

               
               2-792, gnl|Hg17|chr4 (124176199-124176970)
               

               
               2-792, gnl|Mm7|chr3 (37220107-37220872)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               aor (0.390549)
               

               
               mgm (0.180343)
               

               
               nje (0.16592)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               mgm (0.180343)
               

               
               nje (0.16592)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	2-792, gnl\|bosTau2\|chr17 (20112201-20111427)
	2-792, gnl\|Hg17\|chr4 (124176199-124176970)
	2-792, gnl\|Mm7\|chr3 (37220107-37220872)

	aor (0.390549)
	mgm (0.180343)
	nje (0.16592)
	ste (0.135208)
	pla (0.133672)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)