Non-Coding RNA Search

Ss1.1-rret16_l16.5

Sequence:


               
               GATGGCGCAGGAGGCCGGCGACATGGAAGATGGGCAGCTTTCCGACTCGGATTCCGACAT
GACGGTGGCACCCAGCGAGAGGCCGCTGCCGGTGCCGAAAGCACTAGGTGGGGACTGCGC
AGTGAGGCCCTTCCCGGGTACTGCAGCAGTGTGTGCGCCGGTATCACATTATCGGACTGT
GAAAAGTGTGGATTCAAGTGAAGAGAGTTTTTCGGATTCAGATGATGATAGCTCTCTCTG
GAAACGCAAGCGACAGAAATGCTTCAATATTCCTCCCAAACCAGAGCCTTTTCAGTTTGG
CCAGAGCAGCCAGAAACCACCTGTTGCTGGAGGGAAGAGGGTTAACAACATATGGGGTGC
AGTGCTGCAGGAACAGAATCAAGATGCAGTGGCCACTGAACTTGGTATCTTGGGAATGGA
GGGCACTATTGACAGAAGCCGACAATCCGAGACCTACAATTACTTGCTTGCTAAGAAACT
TAAGAGGGAAGCTCAAGAACATACAAAAGAATTAGACAAAGAGCTGGATGAATATATGCA
CGGTGGCCAAAAAACGGGATCAAAGGAGGAGGAAAACGGGCAAAGTCATCTCAAAAGGAA
GCGACCTGTCAAAGACAGACTAGGAGACAGACTAGAAATGAACTATAAAGGCCGATATGA
GATCACAGAGGATGATTCTCAAGAGAAAGTGGCTGATGAAATTTCTTTCAGGTTGCAGGA
ACCAAAGAAAGATTTGATCGCCCGAGTAGTGAGGATAATTGGGAACAAAAAGGCGATTGA
ACTTCTGATGGAGACTGCTGAAGTTGAACAAAATGGTGGCCTTTTTATAATGAATGGTAG
CCGAAGAAGAACACCTGGTGGAGTTTTCCTGAATCTCCTGAAAAACACTCCTAGTATCAG
TGAGGAACAAATTAAGGACATTTTCTACCTTGAAAATCAAAAGGAATATGAAAATAAAAA
AGCTGCTAGGAAGAGGAGAACACAAGTGTTGGGAAAAAAGATGAAGCAAGCTATTAAAAG
TCTGAATTTTCAAGAAGACGATGATACATCTCGAGAGACTTTTGCAAGTGACACAAATGA
GGCCCTGGCCTCTCTTGATGAATCACAGGAAGGACACGGAGAAACAAAGCTGGATGCAGA
GGAAGCCATTGAGGTTGATCATTCTCACGATTTAGACATCTTTTAGTACATTTTGTGTAC
TTCTCAACTAGTGTTGTAATAAACCATTTCTACTGAGATTGCTTTATTTTACTTTGCACT
GATGAACATGAAAATCTGGAGAGAAAACTTTTTTTTTTTTAAATAAATGAGTATATAGGG
AGATGGATGTGATTGATAAGAACATTTAAAACTTCCTGATGTCTGACAAAATACTGAAAA
GTGTATAGCAGAGGATTTAATTTCTCAATGTGTTGCATGTACTAATTATTACTAGTTGAT
CAGTTTTGTCCAAGTCATTATAACATGCCATCCAGAAGTTTTTCTGATTTATCTTTGCAG
TGAATTATGATTGATTTCAAAACATTCCATTAAAAGATCCTAATATGATGTAAATTGTTA
AGCTATTATAAATATATTCACATTTAGTTTTTCTGTGTTCTGGGAACTCTTAGGCAGTTT
TAATGATAGAGACTAAAATTAAGTTTATACTAGTGGCTCTTCCCACTTACTTGTTTGTCC
AGAAGTAAATAAACATCAGAAGCATTTCAAATAAGTATTGGTTCTTAACGTTATTTTTGA
CTTCTTATTAGTTACCTGGGTCATATACTAAATTCTGAAAATGATCCATACCTACATAGT
TACAATGCCATTTAAAAAATTCCCAGTGGTGGCCTGCCTAAGATTGTTTTACCTTATGTT
AAGGAAGTTAGGTATTAAAAATGTTTTGTCTGCATGATGTTTTAAAATTATTCATTTTAA
TTTAAGGAAATAAAGATAGTTTACTTAAGATAACTCTAAGAATTGACTATAGTTTTCGAA
ATAGGTTAAGCAAAAATATGTAGGAAGCAGTTATTAACTTTTCTTTGCAGCAATGTACTT
GAAGTCTTTTCAGTAGTTTCTGAAATACATGATCATTGAAGTTGGATCTAAGTAAGCAAG
GAAGGAAGAGGAAAGTGGTTTTTGGTTGCTTTTTGTCATAAGAATGCAAAAATAAAATTG
GAGTTTTGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGCGCAGGAGGCCGGCGACATGGAAGATGGGCAGCTTTCCGACTCGGATTCCGACAT
GACGGTGGCACCCAGCGAGAGGCCGCTGCCGGTGCCGAAAGCACTAGGTGGGGACTGCGC
AGTGAGGCCCTTCCCGGGTACTGCAGCAGTGTGTGCGCCGGTATCACATTATCGGACTGT
GAAAAGTGTGGATTCAAGTGAAGAGAGTTTTTCGGATTCAGATGATGATAGCTCTCTCTG
GAAACGCAAGCGACAGAAATGCTTCAATATTCCTCCCAAACCAGAGCCTTTTCAGTTTGG
CCAGAGCAGCCAGAAACCACCTGTTGCTGGAGGGAAGAGGGTTAACAACATATGGGGTGC
AGTGCTGCAGGAACAGAATCAAGATGCAGTGGCCACTGAACTTGGTATCTTGGGAATGGA
GGGCACTATTGACAGAAGCCGACAATCCGAGACCTACAATTACTTGCTTGCTAAGAAACT
TAAGAGGGAAGCTCAAGAACATACAAAAGAATTAGACAAAGAGCTGGATGAATATATGCA
CGGTGGCCAAAAAACGGGATCAAAGGAGGAGGAAAACGGGCAAAGTCATCTCAAAAGGAA
GCGACCTGTCAAAGACAGACTAGGAGACAGACTAGAAATGAACTATAAAGGCCGATATGA
GATCACAGAGGATGATTCTCAAGAGAAAGTGGCTGATGAAATTTCTTTCAGGTTGCAGGA
ACCAAAGAAAGATTTGATCGCCCGAGTAGTGAGGATAATTGGGAACAAAAAGGCGATTGA
ACTTCTGATGGAGACTGCTGAAGTTGAACAAAATGGTGGCCTTTTTATAATGAATGGTAG
CCGAAGAAGAACACCTGGTGGAGTTTTCCTGAATCTCCTGAAAAACACTCCTAGTATCAG
TGAGGAACAAATTAAGGACATTTTCTACCTTGAAAATCAAAAGGAATATGAAAATAAAAA
AGCTGCTAGGAAGAGGAGAACACAAGTGTTGGGAAAAAAGATGAAGCAAGCTATTAAAAG
TCTGAATTTTCAAGAAGACGATGATACATCTCGAGAGACTTTTGCAAGTGACACAAATGA
GGCCCTGGCCTCTCTTGATGAATCACAGGAAGGACACGGAGAAACAAAGCTGGATGCAGA
GGAAGCCATTGAGGTTGATCATTCTCACGATTTAGACATCTTTTAGTACATTTTGTGTAC
TTCTCAACTAGTGTTGTAATAAACCATTTCTACTGAGATTGCTTTATTTTACTTTGCACT
GATGAACATGAAAATCTGGAGAGAAAACTTTTTTTTTTTTAAATAAATGAGTATATAGGG
AGATGGATGTGATTGATAAGAACATTTAAAACTTCCTGATGTCTGACAAAATACTGAAAA
GTGTATAGCAGAGGATTTAATTTCTCAATGTGTTGCATGTACTAATTATTACTAGTTGAT
CAGTTTTGTCCAAGTCATTATAACATGCCATCCAGAAGTTTTTCTGATTTATCTTTGCAG
TGAATTATGATTGATTTCAAAACATTCCATTAAAAGATCCTAATATGATGTAAATTGTTA
AGCTATTATAAATATATTCACATTTAGTTTTTCTGTGTTCTGGGAACTCTTAGGCAGTTT
TAATGATAGAGACTAAAATTAAGTTTATACTAGTGGCTCTTCCCACTTACTTGTTTGTCC
AGAAGTAAATAAACATCAGAAGCATTTCAAATAAGTATTGGTTCTTAACGTTATTTTTGA
CTTCTTATTAGTTACCTGGGTCATATACTAAATTCTGAAAATGATCCATACCTACATAGT
TACAATGCCATTTAAAAAATTCCCAGTGGTGGCCTGCCTAAGATTGTTTTACCTTATGTT
AAGGAAGTTAGGTATTAAAAATGTTTTGTCTGCATGATGTTTTAAAATTATTCATTTTAA
TTTAAGGAAATAAAGATAGTTTACTTAAGATAACTCTAAGAATTGACTATAGTTTTCGAA
ATAGGTTAAGCAAAAATATGTAGGAAGCAGTTATTAACTTTTCTTTGCAGCAATGTACTT
GAAGTCTTTTCAGTAGTTTCTGAAATACATGATCATTGAAGTTGGATCTAAGTAAGCAAG
GAAGGAAGAGGAAAGTGGTTTTTGGTTGCTTTTTGTCATAAGAATGCAAAAATAAAATTG
GAGTTTTGGCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|10436345|dbj|BAB14809.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10436345|dbj|BAB14809.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               92-713, gnl|bosTau2|chr7 (23383996-23383375)
               

               
               92-713, gnl|Hg17|chr5 (125967155-125967776)
               

               
               92-713, gnl|Mm7|chr18 (56957078-56957672)
               


               
               1036-2172, gnl|bosTau2|chr27 (30213444-30214573)
               

               
               1036-2172, gnl|Hg17|chr11 (6821432-6819791)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-713, gnl|bosTau2|chr7 (23383996-23383375)
               

               
               92-713, gnl|Hg17|chr5 (125967155-125967776)
               

               
               92-713, gnl|Mm7|chr18 (56957078-56957672)
               


               
               1036-2172, gnl|bosTau2|chr27 (30213444-30214573)
               

               
               1036-2172, gnl|Hg17|chr11 (6821432-6819791)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               ret (0.643666)
               

               
               tra (0.369276)
               

               
               clu (0.358938)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               tra (0.369276)
               

               
               clu (0.358938)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	92-713, gnl\|bosTau2\|chr7 (23383996-23383375)
	92-713, gnl\|Hg17\|chr5 (125967155-125967776)
	92-713, gnl\|Mm7\|chr18 (56957078-56957672)

	1036-2172, gnl\|bosTau2\|chr27 (30213444-30214573)
	1036-2172, gnl\|Hg17\|chr11 (6821432-6819791)

	ret (0.643666)
	tra (0.369276)
	clu (0.358938)
	fco (0.314416)
	tbr (0.308356)
	fat (0.294855)
	lin (0.291206)
	kid (0.259471)
	mgp (0.230681)
	ecc (0.23007)
	tes (0.207814)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	cki (0.165235)
	lun (0.150489)
	isp (0.150376)
	liv (0.146284)
	lnt (0.142308)
	cst (0.140036)
	nca (0.136874)
	nmm (0.132802)
	ova (0.129132)
	sug (0.127291)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	cbl (0.114797)
	spc (0.113366)
	jej (0.0989218)