Ss1.1-rret16_p11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGGGTCATAGTATCATCATTCTTCTCCTTTACAGTTGCTAGGTTGCAGTAACATGATA TATCTAGCTGTTAGAATTACAGGCCTTTTGTACAACTATCTCAAATTCTCAGGTCATCAG AATTAAGTTAGTCTTTGTGAATAACATGTGAGCCTACCTCTGCCATGATGAAGTCTCAAT ATGAATATTCATGAGGTTATTTCAAAAAAATAAAGGCCACAAAATGGTAACTGCCAAGAA GGATAGTCTTGGGGTCAGAAAACGTGCCATTGCATTGCTGTATGATGAAATAGACTTTTA TAATGTATTGTTATTGATTATAGTAGACTGTAAAGATTTTATTTTTCTATAAATTTAATA TTCTTTTGTACAGTATAAGTCAGAACTCATTTAAAAAATTTTAAGGAATCCTTTATGGAA TCACTGAAACTTTCTTCCCTATTTCAAGTGAATGAACCAAGCATGTGACTTAGCAGATTT TTATTAGGTCAAATTCTTGGTATTTATTTTGTTGGTTTAGACTTATAAGACTAGTTACTA CTCTGCCTTGTAAATGTAGCCAAAGTATGAAGCATATTCAAGAGTAGTAAATTACTTTCA TTATGCCTGTAAAAGCACAAATTTTAAAGTGAGGTTGTTCCAATTTTACCCCTAAAAATA TTTCTGTATCATAAAATTTAGATAACTTATTTTAGAATAATTTTTATCCATGTATCTTGA ATAATATACCTTACAGAGTATGTGTTATTTACTCTTTATATTTAACAATTAAAAATAACT ATAACTGAATAGCAAATAGTTTATTAGTAAGTACAGGGTTTCAGTGACAATAATAAATTC ACTTAGAAGACAATAATCAAATCAAAAGAATAAATGCTTGCTAATCATCAGAAAATCTGT AGCTATTAGGGCTGTCACGCAGAAATCCAAAATCACTCAGAGGCCAAATCTGGGATATCC CTGCATTACAGCTGGTTGGACTCTAGGCTGCCCTTCTGCAAATGCATATTGATATATGCC CTTAAAGAAGATACGTCCTCTTATTAGTCCATATGGAACAGGTCCATAGTACCTGGAATC TGTAGAATTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGGGTCATAGTATCATCATTCTTCTCCTTTACAGTTGCTAGGTTGCAGTAACATGATA TATCTAGCTGTTAGAATTACAGGCCTTTTGTACAACTATCTCAAATTCTCAGGTCATCAG AATTAAGTTAGTCTTTGTGAATAACATGTGAGCCTACCTCTGCCATGATGAAGTCTCAAT ATGAATATTCATGAGGTTATTTCAAAAAAATAAAGGCCACAAAATGGTAACTGCCAAGAA GGATAGTCTTGGGGTCAGAAAACGTGCCATTGCATTGCTGTATGATGAAATAGACTTTTA TAATGTATTGTTATTGATTATAGTAGACTGTAAAGATTTTATTTTTCTATAAATTTAATA TTCTTTTGTACAGTATAAGTCAGAACTCATTTAAAAAATTTTAAGGAATCCTTTATGGAA TCACTGAAACTTTCTTCCCTATTTCAAGTGAATGAACCAAGCATGTGACTTAGCAGATTT TTATTAGGTCAAATTCTTGGTATTTATTTTGTTGGTTTAGACTTATAAGACTAGTTACTA CTCTGCCTTGTAAATGTAGCCAAAGTATGAAGCATATTCAAGAGTAGTAAATTACTTTCA TTATGCCTGTAAAAGCACAAATTTTAAAGTGAGGTTGTTCCAATTTTACCCCTAAAAATA TTTCTGTATCATAAAATTTAGATAACTTATTTTAGAATAATTTTTATCCATGTATCTTGA ATAATATACCTTACAGAGTATGTGTTATTTACTCTTTATATTTAACAATTAAAAATAACT ATAACTGAATAGCAAATAGTTTATTAGTAAGTACAGGGTTTCAGTGACAATAATAAATTC ACTTAGAAGACAATAATCAAATCAAAAGAATAAATGCTTGCTAATCATCAGAAAATCTGT AGCTATTAGGGCTGTCACGCAGAAATCCAAAATCACTCAGAGGCCAAATCTGGGATATCC CTGCATTACAGCTGGTTGGACTCTAGGCTGCCCTTCTGCAAATGCATATTGATATATGCC CTTAAAGAAGATACGTCCTCTTATTAGTCCATATGGAACAGGTCCATAGTACCTGGAATC TGTAGAATTCTG |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 785-951, gnl|bosTau2|chr13 (33260142-33259972) | |
| 785-951, gnl|canFam2|chr5 (25828958-25828855) | |
| 785-951, gnl|canFam2|chr5 (25828785-25828954) | |
| 785-951, gnl|dasNov1|scaffold_242515 (862-1047) | |
| 785-951, gnl|dasNov1|scaffold_75830 (7933-8041) | |
| 785-951, gnl|echTel1|scaffold_320840 (79183-79079) | |
| 785-951, gnl|echTel1|scaffold_320840 (79014-79177) | |
| 785-951, gnl|hg17|chr11 (63156699-63156808) | |
| 785-951, gnl|Hg17|chr11 (63156871-63156701) | |
| 785-951, gnl|hg17|chrX (126482805-126482986) | |
| 785-951, gnl|loxAfr1|scaffold_21821 (9757-9861) | |
| 785-951, gnl|loxAfr1|scaffold_21821 (9921-9763) | |
| 785-951, gnl|mm7|chr5 (56985407-56985505) | |
| 785-951, gnl|mm7|chr5 (56985580-56985413) | |
| 785-951, gnl|Mm7|chr5 (56985565-56985408) | |
| 785-951, gnl|monDom2|scaffold_10 (77501408-77501295) | |
| 785-951, gnl|oryCun1|scaffold_104001 (3453-3358) | |
| 785-951, gnl|oryCun1|scaffold_211250 (7876-7706) | |
| 785-951, gnl|panTro1|chr19 (68546703-68546880) | |
| 785-951, gnl|panTro1|chr9 (64152995-64153104) | |
| 785-951, gnl|rheMac2|chr14 (10823302-10823198) | |
| 785-951, gnl|rheMac2|chrX (125820582-125820767) | |
| 785-951, gnl|rn3|chr3 (91463958-91464122) | |
| 785-951, gnl|rn3|chr7 (31172338-31172417) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 785-951, gnl|bosTau2|chr13 (33260142-33259972) | |
| 785-951, gnl|canFam2|chr5 (25828958-25828855) | |
| 785-951, gnl|canFam2|chr5 (25828785-25828954) | |
| 785-951, gnl|dasNov1|scaffold_242515 (862-1047) | |
| 785-951, gnl|dasNov1|scaffold_75830 (7933-8041) | |
| 785-951, gnl|echTel1|scaffold_320840 (79183-79079) | |
| 785-951, gnl|echTel1|scaffold_320840 (79014-79177) | |
| 785-951, gnl|hg17|chr11 (63156699-63156808) | |
| 785-951, gnl|Hg17|chr11 (63156871-63156701) | |
| 785-951, gnl|hg17|chrX (126482805-126482986) | |
| 785-951, gnl|loxAfr1|scaffold_21821 (9757-9861) | |
| 785-951, gnl|loxAfr1|scaffold_21821 (9921-9763) | |
| 785-951, gnl|mm7|chr5 (56985407-56985505) | |
| 785-951, gnl|mm7|chr5 (56985580-56985413) | |
| 785-951, gnl|Mm7|chr5 (56985565-56985408) | |
| 785-951, gnl|monDom2|scaffold_10 (77501408-77501295) | |
| 785-951, gnl|oryCun1|scaffold_104001 (3453-3358) | |
| 785-951, gnl|oryCun1|scaffold_211250 (7876-7706) | |
| 785-951, gnl|panTro1|chr19 (68546703-68546880) | |
| 785-951, gnl|panTro1|chr9 (64152995-64153104) | |
| 785-951, gnl|rheMac2|chr14 (10823302-10823198) | |
| 785-951, gnl|rheMac2|chrX (125820582-125820767) | |
| 785-951, gnl|rn3|chr3 (91463958-91464122) | |
| 785-951, gnl|rn3|chr7 (31172338-31172417) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| amn (0.417711) | |
| ret (0.3862) | |
| fty (0.351679) | |
| vin (0.332557) | |
| fat (0.294855) | |
| tra (0.246184) | |
| sag (0.182715) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ret (0.3862) | |
| fty (0.351679) | |
| vin (0.332557) | |
| fat (0.294855) | |
| tra (0.246184) | |
| sag (0.182715) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pgl (0.118483) | |
| ldo (0.0970026) |