Non-Coding RNA Search

Ss1.1-rret17_b16.5

Sequence:


               
               AAGTGGCTTTTAATTATTTTGTGGGCATTATTTGAACACATCTTTTGAAAACAATCTGGA
CCTTAGCCATGCCACACTTGGTTGACTAATTTATTTTGAGTGTTAAAAATTTTCTACTTC
TTTTAATTTAGATTTATCACAGTTCTCTATTATTACTGACTTACTTAGCAAAGATTCATT
TAAGCTTCTGAAAAATGTGATTTCTTGGCAGATTTTCCTTTGACTCAAATGTCTGAAACT
GAATGAAAATGTATCCTGAGTTTTAATTCCTAATTGTGGGAAAAAAAACATTGTTTTTAA
ACAGTTCCAATTTTAAACACATAAAAAACACTTCAAGATCTTCAGGACTTTAAAGCATAT
TTGAAATTATTTTAGTAAGAATTTTGTTTTATCAATACATGTTGATTTCTGTTTTTTAAT
TAAAAGAAAACAAAGATTTCAGAAAGAGGGAGGGAGAATAGCTGGTGGTCCGGGAGTGTG
CTGCTGTTAATTGTTTAATTAACAAAGGGGAAAATGTATATAAACAGATATAAAAGTTAC
CATAAATTCCATGAACTTAAAATCTGTGATTCATTGCCTTAAAACTTTCTCTCTTAGAAT
TTCCATACCGCATGCCAAACCAGTAAAATGGCTTTTAAAAATGTATAGTAGACCAATGTC
AGTTTGTATAAAAGTACCAAGTGAAAATATTTATTACATGCATTGGAAAAAAAAATTGTT
TACCTATTGAATGTTACCTGTTTATGTAGAGCTCTTTAGATGTAATAAAAGAAAACCCTT
CAGTTAAAAAAAAAAAAAAAAAAAAATTCCAAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGGCTTTTAATTATTTTGTGGGCATTATTTGAACACATCTTTTGAAAACAATCTGGA
CCTTAGCCATGCCACACTTGGTTGACTAATTTATTTTGAGTGTTAAAAATTTTCTACTTC
TTTTAATTTAGATTTATCACAGTTCTCTATTATTACTGACTTACTTAGCAAAGATTCATT
TAAGCTTCTGAAAAATGTGATTTCTTGGCAGATTTTCCTTTGACTCAAATGTCTGAAACT
GAATGAAAATGTATCCTGAGTTTTAATTCCTAATTGTGGGAAAAAAAACATTGTTTTTAA
ACAGTTCCAATTTTAAACACATAAAAAACACTTCAAGATCTTCAGGACTTTAAAGCATAT
TTGAAATTATTTTAGTAAGAATTTTGTTTTATCAATACATGTTGATTTCTGTTTTTTAAT
TAAAAGAAAACAAAGATTTCAGAAAGAGGGAGGGAGAATAGCTGGTGGTCCGGGAGTGTG
CTGCTGTTAATTGTTTAATTAACAAAGGGGAAAATGTATATAAACAGATATAAAAGTTAC
CATAAATTCCATGAACTTAAAATCTGTGATTCATTGCCTTAAAACTTTCTCTCTTAGAAT
TTCCATACCGCATGCCAAACCAGTAAAATGGCTTTTAAAAATGTATAGTAGACCAATGTC
AGTTTGTATAAAAGTACCAAGTGAAAATATTTATTACATGCATTGGAAAAAAAAATTGTT
TACCTATTGAATGTTACCTGTTTATGTAGAGCTCTTTAGATGTAATAAAAGAAAACCCTT
CAGTTAAAAAAAAAAAAAAAAAAAAATTCCAAGGAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-787, gnl|bosTau2|chr10 (9922512-9921726)
               

               
               1-787, gnl|Hg17|chr15 (66270108-66270856)
               

               
               1-787, gnl|Mm7|chr9 (62907531-62906721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-787, gnl|bosTau2|chr10 (9922512-9921726)
               

               
               1-787, gnl|Hg17|chr15 (66270108-66270856)
               

               
               1-787, gnl|Mm7|chr9 (62907531-62906721)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cte (0.29274)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	1-787, gnl\|bosTau2\|chr10 (9922512-9921726)
	1-787, gnl\|Hg17\|chr15 (66270108-66270856)
	1-787, gnl\|Mm7\|chr9 (62907531-62906721)

	cte (0.29274)
	mgp (0.230681)
	nms (0.213858)
	aor (0.195274)
	sin (0.174948)
	fat (0.147427)
	spl (0.143184)
	ret (0.128733)
	thg (0.126791)
	spc (0.113366)