Ss1.1-rret17_d19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTAGAGCCCACCTTCGTCTTGATAAGAAAGACGAACCCTTTGTTGGTCCAGCACTAAGT AAGGAGGAAAAAGAGTTGGAAAGGAGAAAAGAATTAAAGAAAATACGAGTAAAATATGGT TTGCAGAATACAGACTATGAAGATGAAAAGGCATTGAAGAATCCAAAATATAAAGATAGA GCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACTTTCCAAAGAGATGATGCTCCT GCATCTGTTCATTTTGAAATTACTGATAGCAACAAAGGTCGGAAGATGTTGGAGAAGATG GGTTGGAAGAAAGGAGAGGGCCTAGGGAAGGATGGTGGAGGAATGAAAACTCCGATCCAG CTTCAACTTCGGCGAACACATGCAGGCTTGGGGACAGGCACACCATCCTCAATTGAAGAT GTTCACCTTCTCCAAAGCAAGAACAAAAAGAACTGGGAGAAAGCACGAGAGAGGTTTGCT GAAAACTTCCCAGAAACTAAATCTCAAAAAGATGTGTCAGGGACCGTGCCGTGGGTCAAA GGGACTGTAGAGTGAAAGTCAGTTGTAGAACACAATGAAGCTTTTTTATAGAGTTTGGAA ACTCTTGTTTTATTGCAGAAATTTTTCCTCCGTAAGAGTCGGTTGCATGAGGGAACTGTG TCATAATGTACCCCCTCATGGTTCAGAAATGTGTAGTAAAGTGTGGTTTGCAGCTTTTTT AAAAAACATTTTTACAAACTAATAAATAGTCACTGAATCAAGTTATGCTGTGAGTGGACT AAAGTTCACAGAGCACGGATGAGCTTATCAAACTTTGCTATTTTATTTTGTCATTTGCAA GACCCATACAAGCAACTAGCCATGTAAGCAAAATTCATGTAACCACTAATGACTTCAATG TACATTTTTCCTTGTCTCCTTTTATTCATTATTGTAAGATGCATAACAAAAGAAACATCA AAAGTTTATAAAAACAGTTCTAACTATATGCATCCTTCTTTGTGCCCTTTAGAATAGACA ATGTTGAGAAAACATGGGTAGTGTATAAATTTTATTATTTTTGAGGTAACCTAAGTAATG TTGGAGAACTAATGAACAGGTGACATGTAGAAAATTAGTCTTTCATTGTTTTCTTCTGTG AAGAATCTGTGAATTTGTACTATATATTAAGCATTTGCATTTGGTTTGTTTCATAGCTGA TATATTTAGATATGAACAATTGAGTACAGTATTGAAATATTCAATGTGCTAGCATTTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTAGAGCCCACCTTCGTCTTGATAAGAAAGACGAACCCTTTGTTGGTCCAGCACTAAGT AAGGAGGAAAAAGAGTTGGAAAGGAGAAAAGAATTAAAGAAAATACGAGTAAAATATGGT TTGCAGAATACAGACTATGAAGATGAAAAGGCATTGAAGAATCCAAAATATAAAGATAGA GCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACTTTCCAAAGAGATGATGCTCCT GCATCTGTTCATTTTGAAATTACTGATAGCAACAAAGGTCGGAAGATGTTGGAGAAGATG GGTTGGAAGAAAGGAGAGGGCCTAGGGAAGGATGGTGGAGGAATGAAAACTCCGATCCAG CTTCAACTTCGGCGAACACATGCAGGCTTGGGGACAGGCACACCATCCTCAATTGAAGAT GTTCACCTTCTCCAAAGCAAGAACAAAAAGAACTGGGAGAAAGCACGAGAGAGGTTTGCT GAAAACTTCCCAGAAACTAAATCTCAAAAAGATGTGTCAGGGACCGTGCCGTGGGTCAAA GGGACTGTAGAGTGAAAGTCAGTTGTAGAACACAATGAAGCTTTTTTATAGAGTTTGGAA ACTCTTGTTTTATTGCAGAAATTTTTCCTCCGTAAGAGTCGGTTGCATGAGGGAACTGTG TCATAATGTACCCCCTCATGGTTCAGAAATGTGTAGTAAAGTGTGGTTTGCAGCTTTTTT AAAAAACATTTTTACAAACTAATAAATAGTCACTGAATCAAGTTATGCTGTGAGTGGACT AAAGTTCACAGAGCACGGATGAGCTTATCAAACTTTGCTATTTTATTTTGTCATTTGCAA GACCCATACAAGCAACTAGCCATGTAAGCAAAATTCATGTAACCACTAATGACTTCAATG TACATTTTTCCTTGTCTCCTTTTATTCATTATTGTAAGATGCATAACAAAAGAAACATCA AAAGTTTATAAAAACAGTTCTAACTATATGCATCCTTCTTTGTGCCCTTTAGAATAGACA ATGTTGAGAAAACATGGGTAGTGTATAAATTTTATTATTTTTGAGGTAACCTAAGTAATG TTGGAGAACTAATGAACAGGTGACATGTAGAAAATTAGTCTTTCATTGTTTTCTTCTGTG AAGAATCTGTGAATTTGTACTATATATTAAGCATTTGCATTTGGTTTGTTTCATAGCTGA TATATTTAGATATGAACAATTGAGTACAGTATTGAAATATTCAATGTGCTAGCATTTGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 136-253, + strand, RNAz p=0.632384 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 136-253, + strand, RNAz p=0.632384 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 125-253, gnl|bosTau2|chr10 (2095385-2095513) | |
| 125-253, gnl|canFam2|chr3 (32540254-32540123) | |
| 125-253, gnl|canFam2|chr3 (32540251-32540116) | |
| 125-253, gnl|danRer3|chr2 (32462899-32462773) | |
| 125-253, gnl|danRer3|chr2 (32462898-32462763) | |
| 125-253, gnl|dasNov1|scaffold_22147 (49923-50055) | |
| 125-253, gnl|dasNov1|scaffold_22147 (49926-50061) | |
| 125-253, gnl|echTel1|scaffold_184666 (1268-1141) | |
| 125-253, gnl|echTel1|scaffold_184666 (1270-1135) | |
| 125-253, gnl|fr1|chrUn (58868701-58868561) | |
| 125-253, gnl|fr1|chrUn (58868680-58868553) | |
| 125-253, gnl|galGal2|chr13_random (152439-152568) | |
| 125-253, gnl|galGal2|chr13_random (152439-152574) | |
| 125-253, gnl|hg17|chr16 (34351054-34351186) | |
| 125-253, gnl|hg17|chr5 (76391196-76391331) | |
| 125-253, gnl|Hg17|chr5 (76391195-76391323) | |
| 125-253, gnl|mm7|chr13 (92417126-92416997) | |
| 125-253, gnl|mm7|chr13 (92417126-92416991) | |
| 125-253, gnl|Mm7|chr13 (92417125-92416997) | |
| 125-253, gnl|monDom2|scaffold_27 (39760324-39760161) | |
| 125-253, gnl|monDom2|scaffold_27 (39776309-39776174) | |
| 125-253, gnl|panTro1|chr4 (39027692-39027557) | |
| 125-253, gnl|panTro1|chrUn_random (8506423-8506291) | |
| 125-253, gnl|rheMac2|chr20 (30327012-30326881) | |
| 125-253, gnl|rheMac2|chr6 (73198434-73198569) | |
| 125-253, gnl|rn3|chr2 (25647458-25647329) | |
| 125-253, gnl|rn3|chr2 (25647458-25647323) | |
| 125-253, gnl|tetNig1|chrUn_random (43611144-43610998) | |
| 125-253, gnl|tetNig1|chrUn_random (43611123-43610990) | |
| 125-253, gnl|xenTro1|scaffold_818 (404808-404943) | |
| 354-1260, gnl|bosTau2|chr10 (2098454-2099349) | |
| 354-1260, gnl|Hg17|chr5 (76394632-76395531) | |
| 354-1260, gnl|Mm7|chr13 (92414749-92413898) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 125-253, gnl|bosTau2|chr10 (2095385-2095513) | |
| 125-253, gnl|canFam2|chr3 (32540254-32540123) | |
| 125-253, gnl|canFam2|chr3 (32540251-32540116) | |
| 125-253, gnl|danRer3|chr2 (32462899-32462773) | |
| 125-253, gnl|danRer3|chr2 (32462898-32462763) | |
| 125-253, gnl|dasNov1|scaffold_22147 (49923-50055) | |
| 125-253, gnl|dasNov1|scaffold_22147 (49926-50061) | |
| 125-253, gnl|echTel1|scaffold_184666 (1268-1141) | |
| 125-253, gnl|echTel1|scaffold_184666 (1270-1135) | |
| 125-253, gnl|fr1|chrUn (58868701-58868561) | |
| 125-253, gnl|fr1|chrUn (58868680-58868553) | |
| 125-253, gnl|galGal2|chr13_random (152439-152568) | |
| 125-253, gnl|galGal2|chr13_random (152439-152574) | |
| 125-253, gnl|hg17|chr16 (34351054-34351186) | |
| 125-253, gnl|hg17|chr5 (76391196-76391331) | |
| 125-253, gnl|Hg17|chr5 (76391195-76391323) | |
| 125-253, gnl|mm7|chr13 (92417126-92416997) | |
| 125-253, gnl|mm7|chr13 (92417126-92416991) | |
| 125-253, gnl|Mm7|chr13 (92417125-92416997) | |
| 125-253, gnl|monDom2|scaffold_27 (39760324-39760161) | |
| 125-253, gnl|monDom2|scaffold_27 (39776309-39776174) | |
| 125-253, gnl|panTro1|chr4 (39027692-39027557) | |
| 125-253, gnl|panTro1|chrUn_random (8506423-8506291) | |
| 125-253, gnl|rheMac2|chr20 (30327012-30326881) | |
| 125-253, gnl|rheMac2|chr6 (73198434-73198569) | |
| 125-253, gnl|rn3|chr2 (25647458-25647329) | |
| 125-253, gnl|rn3|chr2 (25647458-25647323) | |
| 125-253, gnl|tetNig1|chrUn_random (43611144-43610998) | |
| 125-253, gnl|tetNig1|chrUn_random (43611123-43610990) | |
| 125-253, gnl|xenTro1|scaffold_818 (404808-404943) | |
| 354-1260, gnl|bosTau2|chr10 (2098454-2099349) | |
| 354-1260, gnl|Hg17|chr5 (76394632-76395531) | |
| 354-1260, gnl|Mm7|chr13 (92414749-92413898) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| ret (0.3862) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sin (0.174948) | |
| eli (0.151814) | |
| lin (0.145603) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| pgl (0.118483) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.3862) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sin (0.174948) | |
| eli (0.151814) | |
| lin (0.145603) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| pgl (0.118483) |