Non-Coding RNA Search

Ss1.1-rret17_d21.5

Sequence:


               
               GTTTTTATTCATAAGAATTTGAGAAGAATGGTGAGGAGTTGCAAAGATGGTAGAACCAAA
GATAAAGAAACCGGAAAAAAAAAAAGTGTTCAGTAAATTAAGGGACTTAAAAACTAACAA
AATGCATAAATTCCTTTCCTACTTGAACACAAATCAAAATTGAAAAAAAGTTGTCATCAA
TAAAAAGCATTTAAAAAGCGGGGACTGTTATAACCTAGTATAATTTTCTGACACGTTGGA
ATTTTACCCTTATGGGCTTGTTGGTGAACTTTTTCAAAAGTTCAAAGAATAGTGTCTATT
TATGTATGAGAGGGATACTATGTTAATGTTTGCTTTTTGAGACTAACCTGGCCTTAATAC
TAGAAGTCAAACGTTTTGAAAAGGGTCTCATTCTGAACAAATGCAAAATATTAGCAAATG
AGACACAACATAAAAATAATTATTTACTGTGACTCAGAATTATAAGTTGGTGTTTAACAG
AATAACCATTAAATCAGTATCAACAGAACAAAATAGTAAAAATCCAAAGTATTAACTATA
TATACCTTTAAAAATATTAGTAAAATTTACTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTATTCATAAGAATTTGAGAAGAATGGTGAGGAGTTGCAAAGATGGTAGAACCAAA
GATAAAGAAACCGGAAAAAAAAAAAGTGTTCAGTAAATTAAGGGACTTAAAAACTAACAA
AATGCATAAATTCCTTTCCTACTTGAACACAAATCAAAATTGAAAAAAAGTTGTCATCAA
TAAAAAGCATTTAAAAAGCGGGGACTGTTATAACCTAGTATAATTTTCTGACACGTTGGA
ATTTTACCCTTATGGGCTTGTTGGTGAACTTTTTCAAAAGTTCAAAGAATAGTGTCTATT
TATGTATGAGAGGGATACTATGTTAATGTTTGCTTTTTGAGACTAACCTGGCCTTAATAC
TAGAAGTCAAACGTTTTGAAAAGGGTCTCATTCTGAACAAATGCAAAATATTAGCAAATG
AGACACAACATAAAAATAATTATTTACTGTGACTCAGAATTATAAGTTGGTGTTTAACAG
AATAACCATTAAATCAGTATCAACAGAACAAAATAGTAAAAATCCAAAGTATTAACTATA
TATACCTTTAAAAATATTAGTAAAATTTACTCATTT

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-197, gnl|bosTau2|chr16 (23943083-23943268)
               

               
               2-197, gnl|Hg17|chr1 (238120680-238120496)
               


               
               212-576, gnl|bosTau2|chr16 (23943504-23943853)
               

               
               212-576, gnl|Hg17|chr1 (238120480-238120116)
               

               
               212-576, gnl|Mm7|chr1 (175650899-175650569)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-197, gnl|bosTau2|chr16 (23943083-23943268)
               

               
               2-197, gnl|Hg17|chr1 (238120680-238120496)
               


               
               212-576, gnl|bosTau2|chr16 (23943504-23943853)
               

               
               212-576, gnl|Hg17|chr1 (238120480-238120116)
               

               
               212-576, gnl|Mm7|chr1 (175650899-175650569)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ctl (0.306138)
               

               
               ret (0.257467)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)
               

               
               ret (0.257467)

	2-197, gnl\|bosTau2\|chr16 (23943083-23943268)
	2-197, gnl\|Hg17\|chr1 (238120680-238120496)

	212-576, gnl\|bosTau2\|chr16 (23943504-23943853)
	212-576, gnl\|Hg17\|chr1 (238120480-238120116)
	212-576, gnl\|Mm7\|chr1 (175650899-175650569)