Non-Coding RNA Search

Ss1.1-rret17_g12.5

Sequence:


               
               TTACTCCTATAAAATTACTGGAAGTTATAAGTTGCTCAAACATTCTAATAGCCCTAAATA
GGTCTCTGACAACATTGCAATATATAAACTGATTTTCTTAACTATGTCAGCTCAAAAAAC
TGAACAATGCAACAAAGATGATTTAGCTTATATAAGCACTTGCTAGTGACCTATGAAACT
AAACTTTCCTGCAATTCCTTATAATTCTGCTTTCAACCTTAAATCATCACATATCTTTTA
AAGTTTAGAAGGCTTTTTTGAATATATTGCATATAGAGACTATCTTCTTGTGGGTTCCAC
TTTGAACTTTAAATAAGTTTAGGATTATTTCACATCCTGAAACTGTAAAAAGTAATAGTC
TTGAAGTATAATCAGATATTTAAATGACTCTCACTTCTGCTTTCTGTGTACTGATACTAC
TGTATTATAAAAGTTCTATACACCTCATTAATGTACTCAGGTTTAAAGTCAACCCCCAAG
TGATTTAACACCTTTCTCACAAGAATAACTATCAACACATCCTTGAAAGTGCTGCTGAAA
TGTTTCATGTAGCTTTGGAATGGAAGAAGTTCTCTCGAGTCGCACTATCCAATACAGTAG
CCAGTAGCCACATGTGGCTATGGGAGCACTTGAAATGTGGTTGGTCCAAAATAAGATTTG
CAAAAAGTACAAACTATGCTCAGGACTTTGAATATTTAGCATGAAAAAAAGAATGCAAAA
TACATGGCTTCTATAGAAAATAAGAGTATCAAATAGCTCAATTTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACTCCTATAAAATTACTGGAAGTTATAAGTTGCTCAAACATTCTAATAGCCCTAAATA
GGTCTCTGACAACATTGCAATATATAAACTGATTTTCTTAACTATGTCAGCTCAAAAAAC
TGAACAATGCAACAAAGATGATTTAGCTTATATAAGCACTTGCTAGTGACCTATGAAACT
AAACTTTCCTGCAATTCCTTATAATTCTGCTTTCAACCTTAAATCATCACATATCTTTTA
AAGTTTAGAAGGCTTTTTTGAATATATTGCATATAGAGACTATCTTCTTGTGGGTTCCAC
TTTGAACTTTAAATAAGTTTAGGATTATTTCACATCCTGAAACTGTAAAAAGTAATAGTC
TTGAAGTATAATCAGATATTTAAATGACTCTCACTTCTGCTTTCTGTGTACTGATACTAC
TGTATTATAAAAGTTCTATACACCTCATTAATGTACTCAGGTTTAAAGTCAACCCCCAAG
TGATTTAACACCTTTCTCACAAGAATAACTATCAACACATCCTTGAAAGTGCTGCTGAAA
TGTTTCATGTAGCTTTGGAATGGAAGAAGTTCTCTCGAGTCGCACTATCCAATACAGTAG
CCAGTAGCCACATGTGGCTATGGGAGCACTTGAAATGTGGTTGGTCCAAAATAAGATTTG
CAAAAAGTACAAACTATGCTCAGGACTTTGAATATTTAGCATGAAAAAAAGAATGCAAAA
TACATGGCTTCTATAGAAAATAAGAGTATCAAATAGCTCAATTTTATA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               23-660, gnl|bosTau2|chr6 (2101880-2102470)
               

               
               23-660, gnl|Hg17|chr4 (119563769-119564380)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-660, gnl|bosTau2|chr6 (2101880-2102470)
               

               
               23-660, gnl|Hg17|chr4 (119563769-119564380)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ret (0.3862)
               

               
               vin (0.332557)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	23-660, gnl\|bosTau2\|chr6 (2101880-2102470)
	23-660, gnl\|Hg17\|chr4 (119563769-119564380)

	ret (0.3862)
	vin (0.332557)
	lin (0.145603)
	nmm (0.132802)
	thg (0.126791)
	tra (0.123092)