Ss1.1-rret17_g23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCTGCGATCGAAACCTGTCGATGGGAAAAGATGGCGCAGTTCTGACTGGACGTTAGAT CCTCAAGAACTGGCGAGCAAATTTAATTCCAAAACCAAAGCTATAATACTGAATACGCCT CATAACCCTCTTGGCAAGGTGTTCACCAGGGAGGAACTCCAGGTAATCGCTGACCTCTGC ATCAAACATGACACGCTCTGCATCAGTGATGAGGTCTATGAATGGATCGTGTACACCGGG AAGAAGCACTTTAAAATAGCCACTTTTCCGGGTATGTGGGAAAGAACGATAACCATAGGA AGTGCTGGGAAGACTTTCAGTGTAACTGGCTGGAAGCTGGGCTGGTCCATTGGTCCTAAA CACTTGATAAAACATTTACAGACAGTTAATCAAAACAGCATCTTTGCCTGCGCCACTCCC TTGCAGGAGGCCTTGGCTCAAGCACTGTGGGTCGACATCAAGCGCATGGACGAGCCGGAG TGTTACTTTAATTCTTTGCCGAAGGAGTTGGAGGGCAAAAGGGACCGGATGGTACGGTTG CTTGACAGTGCCGGCCTGAGACCCATAGTTCCTGACGGGGGCTACTTCATCATCGCCGAC GTGTCTCTGCTAGATGCAGACCTGTCTGATATGAAGGACAGCAGCGAACCTTATGACTAT AAATTTGTGAAGTGGATGACTAAAAATAAGAAACTGTCAGCCATCCCAGTTTCAGCCTTC TGTAATGCAGAGGTCAAATCACAGTTTGAGAAATTTGTGCGATTTTGCTTCATTAAAAAA GACACTACACTGGATGCTGCTGAAGAAATCATCAAGGCATGGAGTAGTCAGAAGTCTTAA TACATGCAGATAATACACGTTTCTGTTAGATGGCCTAGTATGGGATTACTTAGTGCTGCT ACTTGCTGGGTATTGCAAAGCAAAAATATCAGTACAAATGAAATTTAAAGGAATATTTCC ATTGTTAACCCTACTCCTAACAATATTCAGGTGATCTGATAATTTTTTTCCAGGTGAAAT GTATTAAAACACCTCCTACAGGAGTTCCCACTGTGGCGCAGTGGTTAACGAATCTGACTA GGAATCATGAGGTTTCGGGTTCAATCCCTGGCCTTGCTCAGTGGGTTAAGGATCCAGAGT TGCCATGCTGGGGTGTAGGTCACAGATGCAGCTCGGATCCCGCATTGCTGTGGCTCTGGC GTAGGCAGGTGGCTACAGCTCTGATTCGACCCCTAGCCTGGGAACCTCCATATGCCTATG CTGCAGGAATGGCCCTAGAAAAGGCAAAAAGATTAAAAAATTTAAAAATTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCTGCGATCGAAACCTGTCGATGGGAAAAGATGGCGCAGTTCTGACTGGACGTTAGAT CCTCAAGAACTGGCGAGCAAATTTAATTCCAAAACCAAAGCTATAATACTGAATACGCCT CATAACCCTCTTGGCAAGGTGTTCACCAGGGAGGAACTCCAGGTAATCGCTGACCTCTGC ATCAAACATGACACGCTCTGCATCAGTGATGAGGTCTATGAATGGATCGTGTACACCGGG AAGAAGCACTTTAAAATAGCCACTTTTCCGGGTATGTGGGAAAGAACGATAACCATAGGA AGTGCTGGGAAGACTTTCAGTGTAACTGGCTGGAAGCTGGGCTGGTCCATTGGTCCTAAA CACTTGATAAAACATTTACAGACAGTTAATCAAAACAGCATCTTTGCCTGCGCCACTCCC TTGCAGGAGGCCTTGGCTCAAGCACTGTGGGTCGACATCAAGCGCATGGACGAGCCGGAG TGTTACTTTAATTCTTTGCCGAAGGAGTTGGAGGGCAAAAGGGACCGGATGGTACGGTTG CTTGACAGTGCCGGCCTGAGACCCATAGTTCCTGACGGGGGCTACTTCATCATCGCCGAC GTGTCTCTGCTAGATGCAGACCTGTCTGATATGAAGGACAGCAGCGAACCTTATGACTAT AAATTTGTGAAGTGGATGACTAAAAATAAGAAACTGTCAGCCATCCCAGTTTCAGCCTTC TGTAATGCAGAGGTCAAATCACAGTTTGAGAAATTTGTGCGATTTTGCTTCATTAAAAAA GACACTACACTGGATGCTGCTGAAGAAATCATCAAGGCATGGAGTAGTCAGAAGTCTTAA TACATGCAGATAATACACGTTTCTGTTAGATGGCCTAGTATGGGATTACTTAGTGCTGCT ACTTGCTGGGTATTGCAAAGCAAAAATATCAGTACAAATGAAATTTAAAGGAATATTTCC ATTGTTAACCCTACTCCTAACAATATTCAGGTGATCTGATAATTTTTTTCCAGGTGAAAT GTATTAAAACACCTCCTACAGGAGTTCCCACTGTGGCGCAGTGGTTAACGAATCTGACTA GGAATCATGAGGTTTCGGGTTCAATCCCTGGCCTTGCTCAGTGGGTTAAGGATCCAGAGT TGCCATGCTGGGGTGTAGGTCACAGATGCAGCTCGGATCCCGCATTGCTGTGGCTCTGGC GTAGGCAGGTGGCTACAGCTCTGATTCGACCCCTAGCCTGGGAACCTCCATATGCCTATG CTGCAGGAATGGCCCTAGAAAAGGCAAAAAGATTAAAAAATTTAAAAATTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 12-141, gnl|bosTau2|chr3 (40129745-40129874) | |
| 12-141, gnl|canFam2|chr6 (62508827-62508670) | |
| 12-141, gnl|danRer3|chrUn (53814337-53814500) | |
| 12-141, gnl|dasNov1|scaffold_20161 (13948-13790) | |
| 12-141, gnl|echTel1|scaffold_289206 (9550-9711) | |
| 12-141, gnl|fr1|chrUn (287807406-287807547) | |
| 12-141, gnl|galGal2|chr8 (15480075-15479920) | |
| 12-141, gnl|hg17|chr1 (89139074-89139235) | |
| 12-141, gnl|Hg17|chr1 (89139211-89139082) | |
| 12-141, gnl|loxAfr1|scaffold_20210 (22750-22589) | |
| 12-141, gnl|mm7|chr3 (142619037-142618881) | |
| 12-141, gnl|Mm7|chr3 (142618902-142619031) | |
| 12-141, gnl|monDom2|scaffold_87 (4955336-4955180) | |
| 12-141, gnl|oryCun1|scaffold_131972 (31768-31608) | |
| 12-141, gnl|panTro1|chr1 (87942483-87942644) | |
| 12-141, gnl|rheMac2|chr1 (91690647-91690808) | |
| 12-141, gnl|rn3|chr3 (9198277-9198419) | |
| 12-141, gnl|tetNig1|chr1_random (329857-329995) | |
| 12-141, gnl|xenTro1|scaffold_538 (515019-514863) | |
| 424-613, gnl|bosTau2|chr3 (40142381-40142570) | |
| 424-613, gnl|canFam2|chr6 (62521906-62521730) | |
| 424-613, gnl|danRer3|chrUn (53798334-53798506) | |
| 424-613, gnl|dasNov1|scaffold_104583 (5101-5277) | |
| 424-613, gnl|fr1|chrUn (287806366-287806527) | |
| 424-613, gnl|galGal2|chr8 (15484329-15484168) | |
| 424-613, gnl|hg17|chr1 (89126775-89126951) | |
| 424-613, gnl|Hg17|chr1 (89126984-89126795) | |
| 424-613, gnl|mm7|chr3 (142627627-142627445) | |
| 424-613, gnl|Mm7|chr3 (142627410-142627599) | |
| 424-613, gnl|monDom2|scaffold_87 (4969151-4968981) | |
| 424-613, gnl|oryCun1|scaffold_192125 (42656-42832) | |
| 424-613, gnl|panTro1|chr1 (87930107-87930281) | |
| 424-613, gnl|rheMac2|chr1 (91678265-91678441) | |
| 424-613, gnl|tetNig1|chr1_random (328316-328490) | |
| 424-613, gnl|xenTro1|scaffold_538 (521060-520884) | |
| 778-1037, gnl|bosTau2|chr3 (40155281-40155541) | |
| 778-1037, gnl|Hg17|chr1 (89113949-89113677) | |
| 778-1037, gnl|Mm7|chr3 (142637010-142637255) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-141, gnl|bosTau2|chr3 (40129745-40129874) | |
| 12-141, gnl|canFam2|chr6 (62508827-62508670) | |
| 12-141, gnl|danRer3|chrUn (53814337-53814500) | |
| 12-141, gnl|dasNov1|scaffold_20161 (13948-13790) | |
| 12-141, gnl|echTel1|scaffold_289206 (9550-9711) | |
| 12-141, gnl|fr1|chrUn (287807406-287807547) | |
| 12-141, gnl|galGal2|chr8 (15480075-15479920) | |
| 12-141, gnl|hg17|chr1 (89139074-89139235) | |
| 12-141, gnl|Hg17|chr1 (89139211-89139082) | |
| 12-141, gnl|loxAfr1|scaffold_20210 (22750-22589) | |
| 12-141, gnl|mm7|chr3 (142619037-142618881) | |
| 12-141, gnl|Mm7|chr3 (142618902-142619031) | |
| 12-141, gnl|monDom2|scaffold_87 (4955336-4955180) | |
| 12-141, gnl|oryCun1|scaffold_131972 (31768-31608) | |
| 12-141, gnl|panTro1|chr1 (87942483-87942644) | |
| 12-141, gnl|rheMac2|chr1 (91690647-91690808) | |
| 12-141, gnl|rn3|chr3 (9198277-9198419) | |
| 12-141, gnl|tetNig1|chr1_random (329857-329995) | |
| 12-141, gnl|xenTro1|scaffold_538 (515019-514863) | |
| 424-613, gnl|bosTau2|chr3 (40142381-40142570) | |
| 424-613, gnl|canFam2|chr6 (62521906-62521730) | |
| 424-613, gnl|danRer3|chrUn (53798334-53798506) | |
| 424-613, gnl|dasNov1|scaffold_104583 (5101-5277) | |
| 424-613, gnl|fr1|chrUn (287806366-287806527) | |
| 424-613, gnl|galGal2|chr8 (15484329-15484168) | |
| 424-613, gnl|hg17|chr1 (89126775-89126951) | |
| 424-613, gnl|Hg17|chr1 (89126984-89126795) | |
| 424-613, gnl|mm7|chr3 (142627627-142627445) | |
| 424-613, gnl|Mm7|chr3 (142627410-142627599) | |
| 424-613, gnl|monDom2|scaffold_87 (4969151-4968981) | |
| 424-613, gnl|oryCun1|scaffold_192125 (42656-42832) | |
| 424-613, gnl|panTro1|chr1 (87930107-87930281) | |
| 424-613, gnl|rheMac2|chr1 (91678265-91678441) | |
| 424-613, gnl|tetNig1|chr1_random (328316-328490) | |
| 424-613, gnl|xenTro1|scaffold_538 (521060-520884) | |
| 778-1037, gnl|bosTau2|chr3 (40155281-40155541) | |
| 778-1037, gnl|Hg17|chr1 (89113949-89113677) | |
| 778-1037, gnl|Mm7|chr3 (142637010-142637255) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| sug (0.509165) | |
| ldo (0.485013) | |
| hea (0.408998) | |
| col (0.390016) | |
| mcp (0.341297) | |
| cki (0.330469) | |
| ste (0.270416) | |
| ret (0.257467) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.509165) | |
| ldo (0.485013) | |
| hea (0.408998) | |
| col (0.390016) | |
| mcp (0.341297) | |
| cki (0.330469) | |
| ste (0.270416) | |
| ret (0.257467) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) |