Non-Coding RNA Search

Ss1.1-rret17_k5.5

Sequence:


               
               TTGTACATGTGTAGGCTTTGGCAACCGTGGATATGTGGGTGGCTTGAACTAACTTCAGTT
TTCACTTTGCTTGCCAATAAATCTAAAATACATCGAGTGCTTATCAAACCCAGACAGCTC
TCTTGCCTCCCAGAACTTCCTTTGAAACACCTGGGTACCCTGTTTTTTGCCCCAAGCAGC
GCTGCAGCCTCAGCCTACCACTGAGCTCACCACTTTAACTTATAGTGCATCAGGTTCAAT
GAGTCCTTTCTGTCAGTGGCAACAAGCCTATTTCCAGGTATCTGCCATCGCCTTGGTTGA
GCTGCTGCACCTGTGGACCCAGCATGGATGGTGGATATAGCAGCACAGGAATACCACAGA
CTCACACCATTCTTTGCTGAAGCACAGTGGTTTTCATGAATAAGCAGTTCTTAGTTTGGT
GTAAATCTTTGGTTCATTTCCCAGTGCTGGAATGGTTGTTAAACAGTTTATCCCAATTTA
TAGCTGCCTTTTTAAAACGGAGATGATTTGTCAACCTCCTTACCTCATCATGCTGAAAGT
GAATTTCCCCAACTTATTTTGAATCACATTCCAACCAAATCAGTTTCATAAGAATGGACT
TCAAGAAGACTTAGAACTTTTCTAAGCTGTCCATTCAAAGCTACCAAAATGCCAGAGTTT
TACAAGTAACCTATATCTATTAAAATGATTACTTTTGGTAATTGATACATATTTTATTTT
TAAATATTCTTTGTATTTGTTCATATTCATTTTAAAGTAAATACTGAGTTATTACAACCT
GGCAAGTTATAAGCATATTTCTTAATGTAAGTATGTAATACTTTAATAAAGTATGTTGGA
ATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTACATGTGTAGGCTTTGGCAACCGTGGATATGTGGGTGGCTTGAACTAACTTCAGTT
TTCACTTTGCTTGCCAATAAATCTAAAATACATCGAGTGCTTATCAAACCCAGACAGCTC
TCTTGCCTCCCAGAACTTCCTTTGAAACACCTGGGTACCCTGTTTTTTGCCCCAAGCAGC
GCTGCAGCCTCAGCCTACCACTGAGCTCACCACTTTAACTTATAGTGCATCAGGTTCAAT
GAGTCCTTTCTGTCAGTGGCAACAAGCCTATTTCCAGGTATCTGCCATCGCCTTGGTTGA
GCTGCTGCACCTGTGGACCCAGCATGGATGGTGGATATAGCAGCACAGGAATACCACAGA
CTCACACCATTCTTTGCTGAAGCACAGTGGTTTTCATGAATAAGCAGTTCTTAGTTTGGT
GTAAATCTTTGGTTCATTTCCCAGTGCTGGAATGGTTGTTAAACAGTTTATCCCAATTTA
TAGCTGCCTTTTTAAAACGGAGATGATTTGTCAACCTCCTTACCTCATCATGCTGAAAGT
GAATTTCCCCAACTTATTTTGAATCACATTCCAACCAAATCAGTTTCATAAGAATGGACT
TCAAGAAGACTTAGAACTTTTCTAAGCTGTCCATTCAAAGCTACCAAAATGCCAGAGTTT
TACAAGTAACCTATATCTATTAAAATGATTACTTTTGGTAATTGATACATATTTTATTTT
TAAATATTCTTTGTATTTGTTCATATTCATTTTAAAGTAAATACTGAGTTATTACAACCT
GGCAAGTTATAAGCATATTTCTTAATGTAAGTATGTAATACTTTAATAAAGTATGTTGGA
ATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               1-845, gnl|bosTau2|chr13 (9490410-9491224)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-845, gnl|bosTau2|chr13 (9490410-9491224)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	ova (0.258264)
	ret (0.257467)
	sag (0.182715)
	fhi (0.169578)
	cag (0.151194)
	lun (0.150489)
	fat (0.147427)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	spc (0.113366)