Ss1.1-rret17_n10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTAAATGTCCTGACCTATGCATGGATTCTATTACTAAAACTTCTGATGCCGATGATG TTGGGTCTTTTAAAGAAGAAAGCAGAAAGTTTACTGATTCCCAAAGCGCCAGCATTGCTC CTGTAGAAGAAAATGTTTTGGATGATTCTATAAGTGTAAAAAATGGTGATAGTGGTAATG ACTTTGTGACTTGCAACGATACCAATGAGGATGATTTTGGTGACTTTGGCACAGCCAGTG GCACAACCCCACCTTTTGTTACTGGTACCCAAGATTCAATGAGTGATGTCACTTTTGAAG AGTCTTCAGAGCACTTTCCACATTTTAGTGAACCAGGTGATGACTTTGGAGAATTTGGGG AATCAAATGCTGTTTCTTGCCAAGAGGAAATTATATTTACCGAGTCAGACCTAAAACAGA CATCTGATAGTTTATCAGAGGGATGCAGTTTGGCAAGAAAGTCTCCTGGGACAGGCACTG AACCTGTTTCAAAACTGAAAATTGGGCAAGAAGGTGAGTTTGGAGATTTTGATTCTGTGC CAAATAGTCAAGATGACTGCAGTGCTTTTCAAGACTCTGATGATTTTGCAGACTTCAGTT CAGCTGGTCCTAGCCAAGCTGTAGATTGGAATGCTTTTGAGGATGGACAGAAAGATAGCT GCTCTTGGGCTGCTTTTGGAGATCAGCAAGCTACTGAATCTCATCATCGAAAGGAAGCCT GGCAGTCACATAGGACAGATGAAAAGATTGATACCCCAGGAACTCCCAAAATGCACAGTG TCCCCTTAGCAGCTTCCAGAGGAGCAGTTGCTGGTGGTCATTTACAGGAAACAGCCACTT CAGTTCAGACAGCTTTACTAAACCGCCTGGAGCGAATTTTTGAAGCATGTTTTCCTTCCA TATTTGTCCCTGATACTGAAGAAGAAGTTACTTCCCTGAAGCACTTGCTAGAAACAAGCA CCTTGCCAATAAAAACAAGAGAGGCCTTAGCTGAAAGTGGAGAACTGCTGGATGTATGGA CCGAGCTGCAGGATATCCATGATGCACATGGCTTGAGATATCAGTGGGGCGGCTCCCATA GCAACAAGAAGCTTTTGTGCTCCTTGGGAATAGACACTCGAAACATTCTCTTCACGGGCA ATAAGAAGCAGCCTGTCATAGTGCCCATGTATGCAGCAGGATTGGGTATGCTAGAACCCA CCAAGGAACCGTTGAAACCACTATCTGCTGCAGAAAAAATTGCTTCCATCGGTCAGACAA CCACCATGTCACCAGATATGAATACATGTACATCTGACCAATTCCAGGAGTCTCTACCAC CCGTCCAGTTTGACTGGAGTAGCAGTGGCCTTACTAACCCTTTAGATGGTGTGGATCCAG AGTTGTATGAGTTAACAACTTCTAAGCTGGAAATCTCCACCTCAAGCCTCAAAGTGACTG ATGCATTTGCAAGACTCATGTCTACAGTAGAGAAGACAAGCACATCTACCAGGAAACCGA AAAGAGAAGAGCACCTGAGTGAGGAAGCCATCAAGGTGATCGCCAGCCTTCCCGACCTGA CGTTCATGCATGCCAAGGTGTTGATGTTCCCCGCCACCTTGACACCTTCCACAGGCTCCC AAGAGAAGGCAGACGGATAACTGGTGTGAAGTGGACACTATCAGTTGCTTTCCCTTCTCT CCACCCTTCCCTACCATCAAAAGCATACCTGCTCTAATTAAAAAAAAAAAAGAAACTCAA GTTCAGCTGATTTGTTGGTAAGCCGCACTAGAAAGGTATACATAGTAATGTATATTTATT TACATACTGAAGTCGTAAATTTATATTAGAAACAAATGTAAATAATCGGGGGTGAACATT TTTGAAGATTTATTCTTTTTGTGTTGCTGGGGTGTATACATTTATGTCTTTGTGAAATAC ACTGGTGGTGTCCTTCTTACAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTAAATGTCCTGACCTATGCATGGATTCTATTACTAAAACTTCTGATGCCGATGATG TTGGGTCTTTTAAAGAAGAAAGCAGAAAGTTTACTGATTCCCAAAGCGCCAGCATTGCTC CTGTAGAAGAAAATGTTTTGGATGATTCTATAAGTGTAAAAAATGGTGATAGTGGTAATG ACTTTGTGACTTGCAACGATACCAATGAGGATGATTTTGGTGACTTTGGCACAGCCAGTG GCACAACCCCACCTTTTGTTACTGGTACCCAAGATTCAATGAGTGATGTCACTTTTGAAG AGTCTTCAGAGCACTTTCCACATTTTAGTGAACCAGGTGATGACTTTGGAGAATTTGGGG AATCAAATGCTGTTTCTTGCCAAGAGGAAATTATATTTACCGAGTCAGACCTAAAACAGA CATCTGATAGTTTATCAGAGGGATGCAGTTTGGCAAGAAAGTCTCCTGGGACAGGCACTG AACCTGTTTCAAAACTGAAAATTGGGCAAGAAGGTGAGTTTGGAGATTTTGATTCTGTGC CAAATAGTCAAGATGACTGCAGTGCTTTTCAAGACTCTGATGATTTTGCAGACTTCAGTT CAGCTGGTCCTAGCCAAGCTGTAGATTGGAATGCTTTTGAGGATGGACAGAAAGATAGCT GCTCTTGGGCTGCTTTTGGAGATCAGCAAGCTACTGAATCTCATCATCGAAAGGAAGCCT GGCAGTCACATAGGACAGATGAAAAGATTGATACCCCAGGAACTCCCAAAATGCACAGTG TCCCCTTAGCAGCTTCCAGAGGAGCAGTTGCTGGTGGTCATTTACAGGAAACAGCCACTT CAGTTCAGACAGCTTTACTAAACCGCCTGGAGCGAATTTTTGAAGCATGTTTTCCTTCCA TATTTGTCCCTGATACTGAAGAAGAAGTTACTTCCCTGAAGCACTTGCTAGAAACAAGCA CCTTGCCAATAAAAACAAGAGAGGCCTTAGCTGAAAGTGGAGAACTGCTGGATGTATGGA CCGAGCTGCAGGATATCCATGATGCACATGGCTTGAGATATCAGTGGGGCGGCTCCCATA GCAACAAGAAGCTTTTGTGCTCCTTGGGAATAGACACTCGAAACATTCTCTTCACGGGCA ATAAGAAGCAGCCTGTCATAGTGCCCATGTATGCAGCAGGATTGGGTATGCTAGAACCCA CCAAGGAACCGTTGAAACCACTATCTGCTGCAGAAAAAATTGCTTCCATCGGTCAGACAA CCACCATGTCACCAGATATGAATACATGTACATCTGACCAATTCCAGGAGTCTCTACCAC CCGTCCAGTTTGACTGGAGTAGCAGTGGCCTTACTAACCCTTTAGATGGTGTGGATCCAG AGTTGTATGAGTTAACAACTTCTAAGCTGGAAATCTCCACCTCAAGCCTCAAAGTGACTG ATGCATTTGCAAGACTCATGTCTACAGTAGAGAAGACAAGCACATCTACCAGGAAACCGA AAAGAGAAGAGCACCTGAGTGAGGAAGCCATCAAGGTGATCGCCAGCCTTCCCGACCTGA CGTTCATGCATGCCAAGGTGTTGATGTTCCCCGCCACCTTGACACCTTCCACAGGCTCCC AAGAGAAGGCAGACGGATAACTGGTGTGAAGTGGACACTATCAGTTGCTTTCCCTTCTCT CCACCCTTCCCTACCATCAAAAGCATACCTGCTCTAATTAAAAAAAAAAAAGAAACTCAA GTTCAGCTGATTTGTTGGTAAGCCGCACTAGAAAGGTATACATAGTAATGTATATTTATT TACATACTGAAGTCGTAAATTTATATTAGAAACAAATGTAAATAATCGGGGGTGAACATT TTTGAAGATTTATTCTTTTTGTGTTGCTGGGGTGTATACATTTATGTCTTTGTGAAATAC ACTGGTGGTGTCCTTCTTACAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 342-541, - strand, RNAz p=0.967038 | |
| 582-701, + strand, RNAz p=0.538757 | |
| 1684-1799, - strand, RNAz p=0.518641 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 342-541, - strand, RNAz p=0.967038 | |
| 582-701, + strand, RNAz p=0.538757 | |
| 1684-1799, - strand, RNAz p=0.518641 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-848, gnl|bosTau2|chr11 (45425756-45426606) | |
| 1-848, gnl|Hg17|chr2 (64691344-64692194) | |
| 1-848, gnl|Mm7|chr11 (20678535-20677694) | |
| 1002-1127, gnl|bosTau2|chr11 (45441104-45441229) | |
| 1002-1127, gnl|canFam2|chr10 (67298313-67298459) | |
| 1002-1127, gnl|danRer3|chrNA (90037703-90037560) | |
| 1002-1127, gnl|dasNov1|scaffold_1108 (4646-4797) | |
| 1002-1127, gnl|echTel1|scaffold_295814 (53104-52961) | |
| 1002-1127, gnl|fr1|chrUn (285742735-285742615) | |
| 1002-1127, gnl|galGal2|chr3 (7416004-7415853) | |
| 1002-1127, gnl|hg17|chr2 (64707867-64708020) | |
| 1002-1127, gnl|Hg17|chr2 (64707878-64708003) | |
| 1002-1127, gnl|loxAfr1|scaffold_5942 (58979-58826) | |
| 1002-1127, gnl|mm7|chr11 (20661767-20661614) | |
| 1002-1127, gnl|Mm7|chr11 (20661754-20661629) | |
| 1002-1127, gnl|monDom2|scaffold_1 (30051595-30051749) | |
| 1002-1127, gnl|panTro1|chr12 (66940336-66940489) | |
| 1002-1127, gnl|rheMac2|chr13 (64778732-64778885) | |
| 1002-1127, gnl|rn3|chr14 (101523531-101523378) | |
| 1002-1127, gnl|tetNig1|chrUn_random (84157637-84157518) | |
| 1002-1127, gnl|xenTro1|scaffold_321 (593681-593528) | |
| 1184-1308, gnl|bosTau2|chr11 (45445072-45445196) | |
| 1184-1308, gnl|canFam2|chr10 (67301958-67302075) | |
| 1184-1308, gnl|danRer3|chrNA (90036496-90036398) | |
| 1184-1308, gnl|dasNov1|scaffold_1108 (8084-8202) | |
| 1184-1308, gnl|echTel1|scaffold_295814 (49742-49625) | |
| 1184-1308, gnl|fr1|chrUn (285742408-285742320) | |
| 1184-1308, gnl|galGal2|chr3 (7413534-7413429) | |
| 1184-1308, gnl|hg17|chr2 (64711706-64711823) | |
| 1184-1308, gnl|Hg17|chr2 (64711730-64711854) | |
| 1184-1308, gnl|mm7|chr11 (20655869-20655752) | |
| 1184-1308, gnl|Mm7|chr11 (20655843-20655719) | |
| 1184-1308, gnl|monDom2|scaffold_1 (30055948-30056065) | |
| 1184-1308, gnl|panTro1|chr12 (66944165-66944282) | |
| 1184-1308, gnl|rheMac2|chr13 (64782957-64783074) | |
| 1184-1308, gnl|rn3|chr14 (101518499-101518382) | |
| 1184-1308, gnl|tetNig1|chrUn_random (84157260-84157163) | |
| 1184-1308, gnl|xenTro1|scaffold_321 (590261-590162) | |
| 1490-1944, gnl|bosTau2|chr11 (45463025-45463481) | |
| 1490-1944, gnl|Hg17|chr2 (64730670-64731127) | |
| 1490-1944, gnl|Mm7|chr11 (20638210-20637757) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-848, gnl|bosTau2|chr11 (45425756-45426606) | |
| 1-848, gnl|Hg17|chr2 (64691344-64692194) | |
| 1-848, gnl|Mm7|chr11 (20678535-20677694) | |
| 1002-1127, gnl|bosTau2|chr11 (45441104-45441229) | |
| 1002-1127, gnl|canFam2|chr10 (67298313-67298459) | |
| 1002-1127, gnl|danRer3|chrNA (90037703-90037560) | |
| 1002-1127, gnl|dasNov1|scaffold_1108 (4646-4797) | |
| 1002-1127, gnl|echTel1|scaffold_295814 (53104-52961) | |
| 1002-1127, gnl|fr1|chrUn (285742735-285742615) | |
| 1002-1127, gnl|galGal2|chr3 (7416004-7415853) | |
| 1002-1127, gnl|hg17|chr2 (64707867-64708020) | |
| 1002-1127, gnl|Hg17|chr2 (64707878-64708003) | |
| 1002-1127, gnl|loxAfr1|scaffold_5942 (58979-58826) | |
| 1002-1127, gnl|mm7|chr11 (20661767-20661614) | |
| 1002-1127, gnl|Mm7|chr11 (20661754-20661629) | |
| 1002-1127, gnl|monDom2|scaffold_1 (30051595-30051749) | |
| 1002-1127, gnl|panTro1|chr12 (66940336-66940489) | |
| 1002-1127, gnl|rheMac2|chr13 (64778732-64778885) | |
| 1002-1127, gnl|rn3|chr14 (101523531-101523378) | |
| 1002-1127, gnl|tetNig1|chrUn_random (84157637-84157518) | |
| 1002-1127, gnl|xenTro1|scaffold_321 (593681-593528) | |
| 1184-1308, gnl|bosTau2|chr11 (45445072-45445196) | |
| 1184-1308, gnl|canFam2|chr10 (67301958-67302075) | |
| 1184-1308, gnl|danRer3|chrNA (90036496-90036398) | |
| 1184-1308, gnl|dasNov1|scaffold_1108 (8084-8202) | |
| 1184-1308, gnl|echTel1|scaffold_295814 (49742-49625) | |
| 1184-1308, gnl|fr1|chrUn (285742408-285742320) | |
| 1184-1308, gnl|galGal2|chr3 (7413534-7413429) | |
| 1184-1308, gnl|hg17|chr2 (64711706-64711823) | |
| 1184-1308, gnl|Hg17|chr2 (64711730-64711854) | |
| 1184-1308, gnl|mm7|chr11 (20655869-20655752) | |
| 1184-1308, gnl|Mm7|chr11 (20655843-20655719) | |
| 1184-1308, gnl|monDom2|scaffold_1 (30055948-30056065) | |
| 1184-1308, gnl|panTro1|chr12 (66944165-66944282) | |
| 1184-1308, gnl|rheMac2|chr13 (64782957-64783074) | |
| 1184-1308, gnl|rn3|chr14 (101518499-101518382) | |
| 1184-1308, gnl|tetNig1|chrUn_random (84157260-84157163) | |
| 1184-1308, gnl|xenTro1|scaffold_321 (590261-590162) | |
| 1490-1944, gnl|bosTau2|chr11 (45463025-45463481) | |
| 1490-1944, gnl|Hg17|chr2 (64730670-64731127) | |
| 1490-1944, gnl|Mm7|chr11 (20638210-20637757) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| sin (0.349895) | |
| vin (0.332557) | |
| ssp (0.271039) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| nco (0.161734) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.349895) | |
| vin (0.332557) | |
| ssp (0.271039) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| nco (0.161734) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) |