Non-Coding RNA Search

Ss1.1-rret18_f7.5

Sequence:


               
               TGGGCCCACAATCCAGCCTCCAGACTTACAGCTCTGAGAATCAAGAAGACACTTGCTAAG
ATGGTTGAATCTCAAGATGTAAAGATTTGACAGATAAATAATCATGAGAAATTCTAGACT
GCAAAAACTGTTTTCACCCATGGAACAGGTGGAATTAGAGTAGAATAAGGATGTTAACTT
GGTTCTCAGACTTTCCTCACTACACCTTCACAGGCTGCTAATATTAAACCTTTCAGTACT
CTGTAGAATACAAGCTGGGAACTTCTAAACACTTCATTCTTTATATATGGACGACTTTAT
TTTAAATGTGGTTTTTGATGCCTTTTTTTTTTTATTGGGTTTTTATGAACTGCATCAAGA
CTTCAATTCTGATTAAGTCTCCAGTCAAACTCTGGGTACTGAATTACCTATTCATAAAAT
GGTGCTTTCTGTGAAAGCCTTAAGAAGATAAATGAAATTCAGCAGAGATGGAGAAATAGA
CATTTTTGCCTTCTACCTGAGAAAATTTAATCTATTTGTATTCTACCTTTGTAAACAGCC
TATGGATTATGATCTGTTTGGGATACTGCTTAGTTTATGGTAGTTTGTCATGCTTTGATT
GTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTACATGCATGCATACCAGAAT
TCTTCTGCTGCCATTTAAATTAGAAGAAAATAATTTAATTTATGAATGGAAGGTATTTGG
TGGCTTTTGGTTTTGTGCTTTAAAAATGCATTATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGCCCACAATCCAGCCTCCAGACTTACAGCTCTGAGAATCAAGAAGACACTTGCTAAG
ATGGTTGAATCTCAAGATGTAAAGATTTGACAGATAAATAATCATGAGAAATTCTAGACT
GCAAAAACTGTTTTCACCCATGGAACAGGTGGAATTAGAGTAGAATAAGGATGTTAACTT
GGTTCTCAGACTTTCCTCACTACACCTTCACAGGCTGCTAATATTAAACCTTTCAGTACT
CTGTAGAATACAAGCTGGGAACTTCTAAACACTTCATTCTTTATATATGGACGACTTTAT
TTTAAATGTGGTTTTTGATGCCTTTTTTTTTTTATTGGGTTTTTATGAACTGCATCAAGA
CTTCAATTCTGATTAAGTCTCCAGTCAAACTCTGGGTACTGAATTACCTATTCATAAAAT
GGTGCTTTCTGTGAAAGCCTTAAGAAGATAAATGAAATTCAGCAGAGATGGAGAAATAGA
CATTTTTGCCTTCTACCTGAGAAAATTTAATCTATTTGTATTCTACCTTTGTAAACAGCC
TATGGATTATGATCTGTTTGGGATACTGCTTAGTTTATGGTAGTTTGTCATGCTTTGATT
GTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTACATGCATGCATACCAGAAT
TCTTCTGCTGCCATTTAAATTAGAAGAAAATAATTTAATTTATGAATGGAAGGTATTTGG
TGGCTTTTGGTTTTGTGCTTTAAAAATGCATTATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15787980|gb|AAL07565.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15787980|gb|AAL07565.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-156, - strand, RNAz p=0.538344
               

               
               328-439, - strand, RNAz p=0.97714
               

               
               592-708, + strand, RNAz p=0.917668

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-156, - strand, RNAz p=0.538344
               

               
               328-439, - strand, RNAz p=0.97714
               

               
               592-708, + strand, RNAz p=0.917668

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004329, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004329, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-756, gnl|bosTau2|chr28 (31952565-31953302)
               

               
               1-756, gnl|Hg17|chr10 (88673367-88674102)
               

               
               1-756, gnl|Mm7|chr14 (31847979-31847253)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr28 (31952565-31953302)
               

               
               1-756, gnl|Hg17|chr10 (88673367-88674102)
               

               
               1-756, gnl|Mm7|chr14 (31847979-31847253)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               mgp (0.230681)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

	40-156, - strand, RNAz p=0.538344
	328-439, - strand, RNAz p=0.97714
	592-708, + strand, RNAz p=0.917668

	1-756, gnl\|bosTau2\|chr28 (31952565-31953302)
	1-756, gnl\|Hg17\|chr10 (88673367-88674102)
	1-756, gnl\|Mm7\|chr14 (31847979-31847253)

	mgp (0.230681)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)