Non-Coding RNA Search

Ss1.1-rret18_j20.5

Sequence:


               
               ACATAAACGAACTGATTCAAATGTGTGTCGAGTATGCAAAGAAAGTTTCTCTACCAACAT
GCTTCTGATTGAACATGCCAAACTGCATGAAGAGGATCCCTACATTTGTAAATACTGTGA
TTATAAGACAGTTATTTTCGAGAACCTTAGCCAGCACATTGCTGACACCCATTTTAGTGA
TCATCTTTATTGGTGTGAGCAATGTGATGTACAGTTCTCCTCAAGCAGTGAACTCTACTT
GCATTTCCAGGAGCACAGCTGTGATGAACAGTACTTGTGTCAGTTCTGTGAACATGAAAC
AAATGATCCAGAAGACTTGCACAGCCATGTGGTAAATGAGCATGCATGTAAGTTAATAGA
GTTAAGTGATAAGTATAACAATGGAGAACACGGACAGTACAGCCTCTTAAGCAAAATTAC
CTTTGACAAATGTAAAAACTTCTTTGTATGTCAAGTATGTGGTTTTCGGAGTAGACTTCA
TACAAACGTTAACAGGCATGTTGCTATTGAACATACTAAAATTTTTCCTCATGTTTGCGA
TGACTGTGGGAAAGGCTTTTCAAGTATGCTAGAATATTGCAAGCATTTAAATTCACATTT
ATCAGAAGGCATTTATTTATGTCAGTACTGTGAATATTCAACAGGACAGATTGAAGATCT
TAAAATTCATCTAGATTTCAAACATTCAGCTGATTTACCTCATAAATGTAGTGACTGCTT
GATGAGGTTTGGAAATGAAAGGGAATTAATAAGTCACCTTCCAGTCCATGAGACTTCTTG
ATTGTTCTCTTTAACTTCCGTAATGTTGATGTAATATAATAAATTTGACTTTTTTGAAGA
TGTTAAAATGGATGATTTTAAACAACTTATGAGAATTGTCTTTAACAAGTTTTTTAATTC
TCCAATTTTTTTGGCATTGCTAGCTTTTTCAATATGTAATTTATCCTAAATGTGGTATTT
TTGATGCATTGTAGTTTGTAGTTTTTACCACTTTTGGTGACTGTCATCTTGTTTCTTGCA
TGTGCTCTGATTTCATAAATTGATAAGAAACAGATGTACTGAAGAAACTAGACTACGGTT
TTCCTTCTGTAAACATAGGTGCTATAAACTTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATAAACGAACTGATTCAAATGTGTGTCGAGTATGCAAAGAAAGTTTCTCTACCAACAT
GCTTCTGATTGAACATGCCAAACTGCATGAAGAGGATCCCTACATTTGTAAATACTGTGA
TTATAAGACAGTTATTTTCGAGAACCTTAGCCAGCACATTGCTGACACCCATTTTAGTGA
TCATCTTTATTGGTGTGAGCAATGTGATGTACAGTTCTCCTCAAGCAGTGAACTCTACTT
GCATTTCCAGGAGCACAGCTGTGATGAACAGTACTTGTGTCAGTTCTGTGAACATGAAAC
AAATGATCCAGAAGACTTGCACAGCCATGTGGTAAATGAGCATGCATGTAAGTTAATAGA
GTTAAGTGATAAGTATAACAATGGAGAACACGGACAGTACAGCCTCTTAAGCAAAATTAC
CTTTGACAAATGTAAAAACTTCTTTGTATGTCAAGTATGTGGTTTTCGGAGTAGACTTCA
TACAAACGTTAACAGGCATGTTGCTATTGAACATACTAAAATTTTTCCTCATGTTTGCGA
TGACTGTGGGAAAGGCTTTTCAAGTATGCTAGAATATTGCAAGCATTTAAATTCACATTT
ATCAGAAGGCATTTATTTATGTCAGTACTGTGAATATTCAACAGGACAGATTGAAGATCT
TAAAATTCATCTAGATTTCAAACATTCAGCTGATTTACCTCATAAATGTAGTGACTGCTT
GATGAGGTTTGGAAATGAAAGGGAATTAATAAGTCACCTTCCAGTCCATGAGACTTCTTG
ATTGTTCTCTTTAACTTCCGTAATGTTGATGTAATATAATAAATTTGACTTTTTTGAAGA
TGTTAAAATGGATGATTTTAAACAACTTATGAGAATTGTCTTTAACAAGTTTTTTAATTC
TCCAATTTTTTTGGCATTGCTAGCTTTTTCAATATGTAATTTATCCTAAATGTGGTATTT
TTGATGCATTGTAGTTTGTAGTTTTTACCACTTTTGGTGACTGTCATCTTGTTTCTTGCA
TGTGCTCTGATTTCATAAATTGATAAGAAACAGATGTACTGAAGAAACTAGACTACGGTT
TTCCTTCTGTAAACATAGGTGCTATAAACTTTTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27768981|gb|AAH42660.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27768981|gb|AAH42660.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-240, - strand, RNAz p=0.967244

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.967244

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1116, gnl|bosTau2|chr1 (57287005-57288105)
               

               
               2-1116, gnl|Hg17|chr3 (180534133-180535255)
               

               
               2-1116, gnl|Mm7|chr3 (32328673-32329716)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1116, gnl|bosTau2|chr1 (57287005-57288105)
               

               
               2-1116, gnl|Hg17|chr3 (180534133-180535255)
               

               
               2-1116, gnl|Mm7|chr3 (32328673-32329716)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fce (0.543183)
               

               
               isp (0.451128)
               

               
               ski (0.29347)
               

               
               ret (0.257467)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               isp (0.451128)
               

               
               ski (0.29347)
               

               
               ret (0.257467)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	2-1116, gnl\|bosTau2\|chr1 (57287005-57288105)
	2-1116, gnl\|Hg17\|chr3 (180534133-180535255)
	2-1116, gnl\|Mm7\|chr3 (32328673-32329716)

	fce (0.543183)
	isp (0.451128)
	ski (0.29347)
	ret (0.257467)
	rec (0.17307)
	fco (0.157208)
	bfe (0.149858)
	lin (0.145603)
	spl (0.143184)
	kid (0.129735)
	bla (0.124347)
	eru (0.120048)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)