Non-Coding RNA Search

Ss1.1-rret18_p16.5

Sequence:


               
               GGGGAAATTACTTTTTATAGATGAACTATTATGAATAATTCTATAAGGCACATAACCACC
TCTGGCTTATCTTTCAGGTATATCAGAATTTTCATACATCATATTAAGATTTGTTTAAAA
GCAAGATCTATCTGCAGCAGAAATAAAGACTAACCATTTATACTTAGCTCCTTTATCTAT
GGTGCGTGCAACTTTTTATAAATATTATGTTTTATGATGTCTTCCTAAAAGAAATAATTT
CCTGATTTTGTAGTTCATATTAGAAGAATAAAGTTTTCTAGCATTTTCTAACATTGCAAT
AAATCAACGATGAATGGCTTTCAGCAGATCTAAAGGTGGAATAAACCTGTAGAGTAAAAA
AGTTGGTATTTACTTACTGTGAACATTATGCAAATAAACTCAGAAAATATCACTGAGCAT
TGTATGGCTATATATCTCAATGATGGGAGGAAAATTCCACCTTGAAGATGATAGATTGTT
TTATGAGCTTCTACCCGCAGTTTTAGAAAATTTGTATATGAATTATGATTTTAAAAGAAG
TGCTTGTATAAAATGAACATTCAGACATTTAGAAGTGAAATCCAGTAACATCTTTCCTTT
GTGGATTACATTCTCTTCTAATTCTAAAATTCTTTGACATGAGTTTGTGTCTGTCTTAGG
GTTTTAACATTGTTAATTATAATAATCCTAATGAATAATTTTAATCGCACATTAACTTAT
ATTCTGATCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAAATTACTTTTTATAGATGAACTATTATGAATAATTCTATAAGGCACATAACCACC
TCTGGCTTATCTTTCAGGTATATCAGAATTTTCATACATCATATTAAGATTTGTTTAAAA
GCAAGATCTATCTGCAGCAGAAATAAAGACTAACCATTTATACTTAGCTCCTTTATCTAT
GGTGCGTGCAACTTTTTATAAATATTATGTTTTATGATGTCTTCCTAAAAGAAATAATTT
CCTGATTTTGTAGTTCATATTAGAAGAATAAAGTTTTCTAGCATTTTCTAACATTGCAAT
AAATCAACGATGAATGGCTTTCAGCAGATCTAAAGGTGGAATAAACCTGTAGAGTAAAAA
AGTTGGTATTTACTTACTGTGAACATTATGCAAATAAACTCAGAAAATATCACTGAGCAT
TGTATGGCTATATATCTCAATGATGGGAGGAAAATTCCACCTTGAAGATGATAGATTGTT
TTATGAGCTTCTACCCGCAGTTTTAGAAAATTTGTATATGAATTATGATTTTAAAAGAAG
TGCTTGTATAAAATGAACATTCAGACATTTAGAAGTGAAATCCAGTAACATCTTTCCTTT
GTGGATTACATTCTCTTCTAATTCTAAAATTCTTTGACATGAGTTTGTGTCTGTCTTAGG
GTTTTAACATTGTTAATTATAATAATCCTAATGAATAATTTTAATCGCACATTAACTTAT
ATTCTGATCTCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-715, gnl|bosTau2|chr19 (31612994-31613713)
               

               
               1-715, gnl|Hg17|chr13 (93888312-93887617)
               

               
               1-715, gnl|Mm7|chr14 (112412130-112411416)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-715, gnl|bosTau2|chr19 (31612994-31613713)
               

               
               1-715, gnl|Hg17|chr13 (93888312-93887617)
               

               
               1-715, gnl|Mm7|chr14 (112412130-112411416)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ret (3.0896)
               

               
               amn (0.417711)
               

               
               eye (0.170503)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (3.0896)
               

               
               amn (0.417711)
               

               
               eye (0.170503)

	1-715, gnl\|bosTau2\|chr19 (31612994-31613713)
	1-715, gnl\|Hg17\|chr13 (93888312-93887617)
	1-715, gnl\|Mm7\|chr14 (112412130-112411416)